Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1214g00007 ATGGCTCTGCTTCTGGGCGGCATTCAACCTCTGATACTAACTTCTGTTCGTCACGATCATAGAAGACCTTGTATCAGAGTTTGTCGTAGACGCTTCCATTTCACTGTTAATACTAGAATTCATACTGTTCTGTCCAGGCCTTCTTTTAATCGGAGATGCATACTTGGGAGCCCTCCAAAATCAGCGTCCATAGATGGGTTTTCTGTGCAGAAGAATCCAGAAGCTTTAGGTGAAGAAAAAGAAGAAGATAAAGAGTTTCTGAAGAGGCTTAGGAGATGGTTCAGTTTCATTCCTTCGATTTTGCCTGGTGGAAGCTGGTGGAACTTCTCCGAAAATGTCGAAATTCAAGATTCGGCCAAACCCGTCACTGTGTGGCGCGCTCTTGCCAAAATGTGGCAACTTGTTGCTCAAGACCGATGGATTATTTTCTCTGCATTCTCTGCTCTCATTCTTGCAGCGGTTTCGGAGATTTCCATACCGCATTTCTTAACAGCTTCTATCTTCTCCGCACAGAGCGCGGATGTTACAGTTTTCCGGCGCCATGTGCTTCTCTTGGTTCTGTTCTGTATAACTTCGGGAATATGCAGTGGGATAAGAGGCTGCTGTTTTGGAATTGCAAATATGATACTGGTAAAAAGAATGCGAGAAACATTATACTCCTCCCTTCTTCTTCAGGATATATCATTTTTTGACGATGTAACAGTTGGTGATCTGACAAGTAGGCTTGGTGCTGATTGCCAACAAGTTTCACGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAACGTTCTTCAGGGAACAGGTGCATTGACCTACTTGTTATTTTTGTCTTGGCCACTTGGTTTATTTACATTGATGATATGCTCTATATTATCAGCAGTTTTGCTACTTTATGGAAGGTACCAGAAAAAGGCTGCAAAGTTGATCCAAGAAGTCACTGCTTCTGCTAATGAAGTTGCACAAGAGACATTTTCTCTGATTAGAACTGTCCGTGTTTATGGAACAGAAGAAGAGGAACTTGGAAGGTACAAATGGTGGCTGGGAAAGTTAGCTGATATAAGCTTGAGACAAAGTGCTGCGTATGGATTTTGGAATTTCAGCTTCAATAATCTTTATCATTCAACTCAGGTTATCGCCGTGCTGTTTGGAGGAATGTCTATTCTAGCAGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTTATTTATTCAACCTGGTGGGTGGGGGACAGTATATCATCTTTGATGCAATCTGTCGGGGCTAGTGAAAAAGTATTTCACCTGATGGATCTCTCACCTAGCAGTCAGTTCCGTGCAAAAGGAGTAAAGCTGCAGAGGTTACTTGGGAATATTGAATTTATAAATGTATCTTTTCACTATCCTTCAAGGCCAATGGTATCTGTAGTGCGGCATGTAAATTTTGCTGTTCGACCTGGTGAGGTGGTTGCCATAGCTGGTCTTAGTGGCAGTGGAAAAAGTACACTGGTGAACCTTCTGCTCCGCTTATATGAGCCCACCAATGGTCAGATTTTGGTTGATGGCGTCCCTCTTAAAGAGTTGGACATCATGTGGTGGAGAGAAAGAATTGCATTTGTTGGACAGGAACCTAAGCTCTTCAGAATGGATATTAGTTCAAACATAAGATATGGATGCACTCGAGAGATTAAGCAGGAGGATGTTGAATGGGCTGCAAAGCAAGCTTATGCCCATGACTTCATCTCAGCACTTCCTAATGGCTATGAAACACTTGTTGATGATGATTTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTATTCTTAGGGATCCAAAAATATTGATCCTTGATGAAGCCACAAGTGCGCTGGATGCTGAGAGTGAGCATAATGTCAAGGGTGTTCTTCGTTCTGTTAAAAATGACTCCCTGAGTATGAGAAGTGTTATTGTAATTGCACACAGGCTTTCTACCATACAAGCAGCAGACAGGATTGTGGTCATGGATAGCGGTAAAATTGTTGAGATTGGGAGTCACAGTGAACTTCTCTTAAGAGATGGTTTATATGCACGATTGACCAGTAAACAGGCTGACTCGGTGGCATGA 2112 0.4223 MALLLGGIQPLILTSVRHDHRRPCIRVCRRRFHFTVNTRIHTVLSRPSFNRRCILGSPPKSASIDGFSVQKNPEALGEEKEEDKEFLKRLRRWFSFIPSILPGGSWWNFSENVEIQDSAKPVTVWRALAKMWQLVAQDRWIIFSAFSALILAAVSEISIPHFLTASIFSAQSADVTVFRRHVLLLVLFCITSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDDVTVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGTGALTYLLFLSWPLGLFTLMICSILSAVLLLYGRYQKKAAKLIQEVTASANEVAQETFSLIRTVRVYGTEEEELGRYKWWLGKLADISLRQSAAYGFWNFSFNNLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDSISSLMQSVGASEKVFHLMDLSPSSQFRAKGVKLQRLLGNIEFINVSFHYPSRPMVSVVRHVNFAVRPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILVDGVPLKELDIMWWRERIAFVGQEPKLFRMDISSNIRYGCTREIKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVKNDSLSMRSVIVIAHRLSTIQAADRIVVMDSGKIVEIGSHSELLLRDGLYARLTSKQADSVA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1214g00007 703 SUPERFAMILY ABC transporter transmembrane region 131 438 IPR036640 GO:0005524|GO:0016020
Pral1214g00007 703 PANTHER ABC TRANSPORTER B FAMILY 124 694 IPR039421 -
Pral1214g00007 703 Pfam ABC transporter transmembrane region 146 409 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1214g00007 703 SMART AAA_5 485 674 IPR003593 GO:0016887
Pral1214g00007 703 ProSitePatterns ABC transporters family signature. 596 610 IPR017871 GO:0005524|GO:0016887
Pral1214g00007 703 Gene3D ABC transporter type 1, transmembrane domain 109 294 IPR036640 GO:0005524|GO:0016020
Pral1214g00007 703 Gene3D ABC transporter type 1, transmembrane domain 299 447 IPR036640 GO:0005524|GO:0016020
Pral1214g00007 703 Pfam ABC transporter 477 624 IPR003439 GO:0005524
Pral1214g00007 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 458 697 IPR003439 GO:0005524
Pral1214g00007 703 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 145 424 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1214g00007 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 698 IPR027417 -
Pral1214g00007 703 FunFam ABC transporter B family member 26, chloroplastic 124 443 - -
Pral1214g00007 703 FunFam Multidrug ABC transporter ATP-binding protein 450 702 - -
Pral1214g00007 703 CDD ABC_6TM_TAP 145 432 - -
Pral1214g00007 703 Gene3D - 448 699 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1214g00007 Pral-Chr1214 39520 46031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1214g00007 152 698 Calmodulin-binding Proteins AT2G36910 32.035 9.21e-70 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1214g00007 - - gmx:100813359 1072