Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1207g00016 ATGGAGCTTACACAAGTTGGTTTTCTGGAAGAGTTACTCGCTTCAAGAAGAGGAGACCCATGGAATACTATGTCCTCTGGCTTGAATGAACTCTTCTCTTCTACCTCTTGGAGTTTTGACTCTTTCGATGACAACCTTTCAGCTTTATCTACCTTCAATCCTCCATTTTCTGCACTACCAGCTCCATTTATAGACCCCAGACTTGAATATAATTCCTACCCATTTCTTGATGGCTTCACAGGGAACACTGTTGACTCTGCACCACCACTTCAAGCTCATGAAGATGAAGAGCTTGCCTTTCTGGGTTTTGAGAATCACAGTTCTGAGGAAGGAAATACCAACAATAATGCCAGTAATTGCTGCAAAATCGAAGAACAGGTCATGGAAGCTCCAGTTATCAGCATGGGTGTGTGTTGTGGGGAGAAGAAGCCCAAATCGAAGAGGCTAGAAGGGCAGCCTTCCAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAGCGCCTCAATGATCGCTTGTCCATGCTAAGATCAATCGTCCCCAAGATCAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGATTACATGAAGGAGCTTCTGGAAAAGATAAGCAAGTTGCAGGAAGAAATGGAGAAGGAGGGTGAAAATAATCAGTTGAACTTCATGGGCATTTCCAAGGAGGCGAAGCCAAATGAAGTAACGGTGAGAAATTCCCCTAAGTTTGAGGTTGAGCGGAGAGACCAGGACACGAGGATAAATATCTGCTGTGCCACAAAGCCTGGATTACTACTCTCTACAGTGAATACCTTGGAAGCGTTAGGTCTTGAGATTCAACAATGTGTGATAAGTGGCTTCAACGATTTCACAATGCAAGCATCTTGCTCAGAGGTGGCTGAGCAGAGAACTTGTATTGGCTCTGAAGAGATTAAGGAAGCACTGTTCAGAAATGCAGGTTACGGTGGGAGATGCCTGTAG 978 0.4448 MELTQVGFLEELLASRRGDPWNTMSSGLNELFSSTSWSFDSFDDNLSALSTFNPPFSALPAPFIDPRLEYNSYPFLDGFTGNTVDSAPPLQAHEDEELAFLGFENHSSEEGNTNNNASNCCKIEEQVMEAPVISMGVCCGEKKPKSKRLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKISKLQEEMEKEGENNQLNFMGISKEAKPNEVTVRNSPKFEVERRDQDTRINICCATKPGLLLSTVNTLEALGLEIQQCVISGFNDFTMQASCSEVAEQRTCIGSEEIKEALFRNAGYGGRCL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1207g00016 325 SMART finulus 157 206 IPR011598 GO:0046983
Pral1207g00016 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 87 319 - -
Pral1207g00016 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Pral1207g00016 325 Gene3D - 143 218 IPR036638 GO:0046983
Pral1207g00016 325 Coils Coil 194 217 - -
Pral1207g00016 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 219 IPR036638 GO:0046983
Pral1207g00016 325 Pfam Helix-loop-helix DNA-binding domain 157 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1207g00016 Pral-Chr1207 104334 105609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1207g00016 73 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 55.731 1.79e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1207g00016 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1207g00016 - - gmx:100806571 421.394