Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1207g00002 ATGAATATTTGGACCGACGATAACTCCTCCGTCATGGACGCTTTCATTGGTTCCGATCTATCTTCTCTCTGGCCTCCTCAGCAATCCTCTGCCTCAACGACCACTACCACTGGAACTGACCCCACCAAAGCTTTCTCTCAAAACCATCTTTCGGTTTGCATCTTCAATCAGGAGACTCTCCAGCAACGTCTCCAGGCGCTGATTGAAAAAGCCAGCGAGAGCTGGACCTACGCTATCTTCTGGCAATCTTCTTGTGATCACTCGGGAGCTTCCGTGTTGGGTTGGGGTGATGGCTACTACAAAGGCGAGGAGGTAAAAGGAAAGGGGAAGGCCAAAACGACGGCGTCTTCCGCGGCGGAGCAGGAGCACCGGAAAAAGGTTCTTCGCGAGCTTAATTCGCTCATCTCTGGGTCCTCCTCCTCCCCAGATGACGCTGTAGACGAAGAAGTAACAGATACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGCGGATTGCCGGGGCAGGCGTTCCTCAGTTCGAGCCCTGTTTGGGTCGCAGGTTCCGACCGGCTGGCAGCTTCAACATGCGAGAGGGCGAGGCAGGGTCAATTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCGAGTGGGGTGGTCGAACTGGGCTCCTCGGAGCTGATATTTCAAAACTCTGATCTGATGAATATGGTCAGGGATTTGTTCAATTTCAGTGGCGCCGAAGGGAGTTTTTTATGGGGGTCAAATGCTTCAGCTGCGGCTGATCAGGGTGAGAACGACCCTTCTTCGCTCTGGCTCAACGATCCTTCTGCAATTGAAATTAGGGATTCGGTGACTACTGTTGCGCCCAATTCAGTGCCCAGTTCTACCAACAGTCATAACAATAATCCGAAGCCGATGCAGTTAGACACAAGAGGTTCCACGACTTTAGCTGAGACCCCAAGTTCCATCCATATCCCAAACGCTCACCATAGCCACCAACAACAACGGCAACAGCAGCGTCATTCGCTGAACCAGGGTTGCTTTTCACGGGAGTTGAACTTTTCGGACTATGGATTGGACGGAAACGGCGTGAAAAACGGTAATTCGCATTCCATGAAGACGGACTCGGGTGAGATTTTGAATTTCGGGGAGAGCAAGAGAAACGCTCATAATGGTGTGGTTTTGCCCGCTTCAAATGTGAAGACCGTCTGCGGCGGCGATTCTGATCATTCCGATCTCGAAGCTTCTGCGATGAAGGAGGTAGATAGTAAGGTGGTCGAACCAGAGAAAAAACCTCGGAAGAGAGGACGAAAGCCCGCAAATGGCAGAGAGGAGCCTCTGAATCACGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTCAATCAACGGTTCTATGCGCTTCGTGCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATATCTTATATCTCTGAGCTCAAGTCGAAGCTTCAGAGAACGGAATCAGACAAGAACGAATTGCAGAACCAATTGGATTCTGTGAAGAAGGAACTCGAGCTGGCCCACAAAGGTTCAGCGCCACCTCCACGGGAGAAAGAACCAAAGCCGCCCAATCATCATGCTGGCAAGATTACTGATTTGGATATCGACGTGAAGATCATAGGTTGGGACGCGATGATTCGGATTCAATGCAGCCGGAAGAACCACCCGGCAGCAAGGTTGATGGCGGCATTGAAGGAGCTAGACCTGGATGTGAGCCACGCGAGCGTCTCGGTGATGAATGATTTGATGATCCAACAAGCAACGGTGAGGATGGGGGGTCAATTCTACACGCAGGAGCAACTCTGTTCAGCACTGTCGTCCAAAGTTGGCGATGTCCGATAG 1884 0.5117 MNIWTDDNSSVMDAFIGSDLSSLWPPQQSSASTTTTTGTDPTKAFSQNHLSVCIFNQETLQQRLQALIEKASESWTYAIFWQSSCDHSGASVLGWGDGYYKGEEVKGKGKAKTTASSAAEQEHRKKVLRELNSLISGSSSSPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLSSSPVWVAGSDRLAASTCERARQGQLFGLQTLVCIPSASGVVELGSSELIFQNSDLMNMVRDLFNFSGAEGSFLWGSNASAAADQGENDPSSLWLNDPSAIEIRDSVTTVAPNSVPSSTNSHNNNPKPMQLDTRGSTTLAETPSSIHIPNAHHSHQQQRQQQRHSLNQGCFSRELNFSDYGLDGNGVKNGNSHSMKTDSGEILNFGESKRNAHNGVVLPASNVKTVCGGDSDHSDLEASAMKEVDSKVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYISELKSKLQRTESDKNELQNQLDSVKKELELAHKGSAPPPREKEPKPPNHHAGKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVSHASVSVMNDLMIQQATVRMGGQFYTQEQLCSALSSKVGDVR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1207g00002 627 Coils Coil 490 524 - -
Pral1207g00002 627 MobiDBLite consensus disorder prediction 287 343 - -
Pral1207g00002 627 PANTHER MYC 46 622 IPR045084 GO:0003700|GO:0006355
Pral1207g00002 627 SMART finulus 450 499 IPR011598 GO:0046983
Pral1207g00002 627 Gene3D - 436 524 IPR036638 GO:0046983
Pral1207g00002 627 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 444 493 IPR011598 GO:0046983
Pral1207g00002 627 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 447 514 IPR036638 GO:0046983
Pral1207g00002 627 MobiDBLite consensus disorder prediction 405 454 - -
Pral1207g00002 627 MobiDBLite consensus disorder prediction 522 543 - -
Pral1207g00002 627 MobiDBLite consensus disorder prediction 412 454 - -
Pral1207g00002 627 Pfam Helix-loop-helix DNA-binding domain 448 493 IPR011598 GO:0046983
Pral1207g00002 627 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
Pral1207g00002 627 CDD bHLH_AtAIB_like 441 517 - -
Pral1207g00002 627 FunFam Transcription factor bHLH13 437 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1207g00002 Pral-Chr1207 24943 27416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1207g00002 1 624 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.378 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1207g00002 bHLH-MYC_N 2.2e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1207g00002 K13422 - vvi:100250607 719.539