Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1198g00008 ATGGCGTTCCCAAATGGTCAAGCCATGTCGGGTTCATCATCTCCACAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATCGAGAACACCACGAATCGCCAGGTCACTTTCTGTAAGCGCAGAAATGGCCTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTCGCTCTCATCGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTGAAAGCAACAATTGAGAGGTACAAGAAAGCTTGCTCAGATTCGTCTGGTGCTGGATCCACTTCTGAAGCTAACGCTCAGTATTATCAGCAAGAAGCTGCCAAACTGCGTGCTCAAATCAGTAACCTGAGGAATAACAACAGGCAAATGATGGGGGAGACTCTGGCAGGAATGAACGCTAGAGAACTCAAAAACTTGGAGGGTAAGTTAGAGAGAGGCATTAGCAGAATTCGTTCCAAAAAGAATGAACTTCTGTTTGCAGAAATCGAGTACATGCAGAAAAGGGAGGTAGACTTGCACAATAACAACCAGCTTCTTCGAGCTAAGATAGCTGAGAGTGAGAGAAACCAGCAGCAGCAGCAACATAACATGAATGTGTTGCCTGGAGGCTCAAACTATGAAGCAATGCAGTCTCCAAATGAGCATCAGTTTGACTCACGAGGCTTCTTCCAAGTCACTGGTTTGCAACCTACTAATCACTACGCTCCCCAAGACCACATGTCCCTTCAATTAGTGTGA 756 0.4616 MAFPNGQAMSGSSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSTSEANAQYYQQEAAKLRAQISNLRNNNRQMMGETLAGMNARELKNLEGKLERGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLLRAKIAESERNQQQQQHNMNVLPGGSNYEAMQSPNEHQFDSRGFFQVTGLQPTNHYAPQDHMSLQLV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1198g00008 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Pral1198g00008 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 201 - -
Pral1198g00008 251 Gene3D - 31 97 IPR036879 GO:0003677|GO:0046983
Pral1198g00008 251 MobiDBLite consensus disorder prediction 1 17 - -
Pral1198g00008 251 Coils Coil 182 202 - -
Pral1198g00008 251 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1198g00008 251 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Pral1198g00008 251 Pfam K-box region 101 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1198g00008 251 SUPERFAMILY SRF-like 20 91 IPR036879 GO:0003677|GO:0046983
Pral1198g00008 251 MobiDBLite consensus disorder prediction 1 24 - -
Pral1198g00008 251 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Pral1198g00008 251 MobiDBLite consensus disorder prediction 192 218 - -
Pral1198g00008 251 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Pral1198g00008 251 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Pral1198g00008 251 Coils Coil 142 162 - -
Pral1198g00008 251 Coils Coil 105 132 - -
Pral1198g00008 251 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Pral1198g00008 251 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Pral1198g00008 251 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Pral1198g00008 251 CDD MADS_MEF2_like 20 94 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1198g00008 Pral-Chr1198 53432 61168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1198g00008 1 251 MADS-box Gene Family AT3G58780 61.961 5.27e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1198g00008 K-box 7.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1198g00008 K09264 - gmx:732595 392.889