Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1198g00007 ATGGCGTTCCCAAATGGTCAAGCCATGTCGGGTTCATCATCTCCACAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATCGAGAACACCACGAATCGCCAGGTCACTTTCTGTAAGCGCAGAAATGGCCTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTCGCTCTCATCGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTGAAAGCAACAATTGAGAGGTACAAGAAAGCTTGCTCAGATTCGTCTGGTGCTGGATCCACTTCTGAAGCTAACGCTCAGTATTATCAGCAAGAAGCTGCCAAACTGCGTGCTCAAATCAGTAACCTGAGGAATAACAACAGGCAAATGATGGGGGAGACTCTGGCAGGAATGAACGCTAGAGAACTCAAAAACTTGGAGGGTAAGTTAGAGAGAGGCATTAGCAGAATTCGTTCCAAAAAGGTACGATCTTTTTTCTTTCTTGTCTTCTCTTGTTGTATGTGTGGATTTTATAGTTTTTTTCTGACTTTTTCTTCTTCCCTTGTGGCGTTTCTTCCCAAACACTTGCACCAGAATGAACTTCTGTTTGCAGAAATCGAGTACATGCAGAAAAGGGAGGTAGACTTGCACAATAACAACCAGCTTCTTCGAGCTAAGATAGCTGAGAGTGAGAGAAACCAGCAGCAGCAGCAACATAACATGAATGTGTTGCCTGGAGGCTCAAACTATGAAGCAATGCAGTCTCCAAATGAGCATCAGTTTGACTCACGAGGCTTCTTCCAAGTCACTGGTTTGCAACCTACTAATCACTACGCTCCCCAAGACCACATGTCCCTTCAATTAGTGTGA 867 0.4498 MAFPNGQAMSGSSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSTSEANAQYYQQEAAKLRAQISNLRNNNRQMMGETLAGMNARELKNLEGKLERGISRIRSKKVRSFFFLVFSCCMCGFYSFFLTFSSSLVAFLPKHLHQNELLFAEIEYMQKREVDLHNNNQLLRAKIAESERNQQQQQHNMNVLPGGSNYEAMQSPNEHQFDSRGFFQVTGLQPTNHYAPQDHMSLQLV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1198g00007 288 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Pral1198g00007 288 SUPERFAMILY SRF-like 20 91 IPR036879 GO:0003677|GO:0046983
Pral1198g00007 288 Gene3D - 31 97 IPR036879 GO:0003677|GO:0046983
Pral1198g00007 288 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 237 - -
Pral1198g00007 288 MobiDBLite consensus disorder prediction 1 17 - -
Pral1198g00007 288 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Pral1198g00007 288 MobiDBLite consensus disorder prediction 229 248 - -
Pral1198g00007 288 Coils Coil 219 239 - -
Pral1198g00007 288 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Pral1198g00007 288 ProSiteProfiles K-box domain profile. 105 232 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1198g00007 288 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Pral1198g00007 288 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Pral1198g00007 288 Pfam K-box region 101 226 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1198g00007 288 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Pral1198g00007 288 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Pral1198g00007 288 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Pral1198g00007 288 Coils Coil 105 132 - -
Pral1198g00007 288 MobiDBLite consensus disorder prediction 1 25 - -
Pral1198g00007 288 CDD MADS_MEF2_like 20 94 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1198g00007 Pral-Chr1198 53432 61168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1198g00007 1 288 MADS-box Gene Family AT3G58780 54.110 9.35e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1198g00007 K-box 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1198g00007 K09264 - gmx:732595 374.4