Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1184g00024 ATGGGCAAATCCAGCAAGAAATCAGCTCCCAAAGTTGATCCTGCTCCGGCTGTTGTTCCGCCTCCGAAGTCTGCAAAGAAAGGTACGAGAGGCAAGAGGGAAGCTGAGGATGAACTTGAGAAGCTAGTGAGTGCAAAGAAGCAGAAGAGAGATGAAGTTCCTGTGAAGAAGATTGCCAAGGTGCAGAAGAACAAGAAGGAAAGTAGTTCAGATGATTCCTCTTCATCAGCTTCTGAGGAAGACAAGAAAACTGCCAAAAAAGCTGTTCTTCCATCAAAGACAAAACCTTCTAAAAATGGTGCTCTGAGTGGCCGGGTGAACAAAGGCAAGCCAGCTTCTGAATCCTCTGATGATGACTCCGACAGTGATGATGCTGGAAAATCCAAGGTAGCCCCTGCTGCTGGTAAGAATGGGGCTCTTTTGACGAAGAAGAAGGCCGAGTCAAGTGCCAGCTCAGATACTGATAGCAGTTCAGATGAAGACAATGATGTGAGAACTAAAGTTGCCCCTCTATCCAAGAAGGCACCTGTTGCTGCAGCTAAGAAAGATGAATCAGACACGGAATCTGACAGCAGCTCTGATGAGGATGATGTCCCCACTAAATCATCCAAGAAGTTGCCTGCTGCAGGTAAAAGTATACCTGCTAAAAAAATTGAGTCAAGTGACGATACATCCTCTGATAGTAGCTCAGATGAAGATGATGAGCCACCTGCTGCATCTAAGAAGTTGCCTGCAACAGCAGTTCCTTCCAAGAAGAAGGCTGAGAGCAGTGAAAGCTCCGAAGATGAATCAAGTGAAAGCTCTGATGATGATAATGTAAAGAAGCCTTCTGTCAAAGCTGTTTCCAAGCCTTCCACTGCTCCAAAGGTTGAATCTAGTAAGAGCTCAGATTCTGATAGCAGTAGCTCTGAGGAAGACAACAAAAATAAAAAGGGAGCCAATCATGCTTCCAATATCAAGCCAGCAAAGGCTTCTGAGAAGATTTCCAAGTTAAAGGAGAGTTCTGATGACACTGATTCTGATGATGAGGAGGAATCTTCTGACGGTGATTCTGAGGATGAGAAGAAAACCGCTCCCAAGGCTAATGCTAAAGCAGCTGCTGCTGTGAAGACAGCCAAAGAGGAGTCTAGTGAAAGTTCATCTGAAAACGACTCTTCAGAAGATGAGAAAACTGCTCCCAAGTCTAATATTAAAGCATCTGCTGGTGCAAAGACAGTTAAAAAGGAGTCTAGTGAAGGTTCATCTGAAGATGACTCTTCGGAAGATGAGGATAAGATGGATGTTGACGAGGATAGTAGTTCTGAAGAAAGTGAGGAGGAGCCGCAACAGAAAAAGGCTAAGGATGTGGAGATGGTTGATACTGCATCAGCGAAGTCAAGTGGAAAGAAAGCTCCCAGCACCCCAGTTACTCCCAAAGTGCAGAATACCACGTCAAAGACTCTTTTTGTTGGAAATTTGTCATATAATGTAGAACGGACTGATGTGGAAAACTTCTTTAAAGATTGTGGAGAAGTGGTAGATGTCCGTTTGGCTTCAGATGAAACTGGGAGATTTAAAGGCTTTGGGCATGTTGAATTTGCCACAGCTGAAGCAGCACAAAATGCCCTTGAGCTGAATGGTGAAGAATTGCTTCAGCGTCCTGTCAAACTTGATTTAGCTCGTGAAAGGGGAGCATATACCCCCAATAGCAGCAACTGGAGCAATTCATTCCAGAAAGGAGGACATGCTCAAGCTCATACAGTATTCATTAAGGGTTTTGATACATCCCAAGGAGAAGATGAGATTAAGACTAACCTGAGAGAGCATTTCAACTGTGGAGAGATTACAAGGATATCAGTTCCTAAAGATTACGAGACTGGTGCTGCCAAGGGGTATGCCTACATGGATTTCAAGGATGTTAATGCCTTCAACAAAGCGCTAGAATTGAGTGGTAGTGAGCTTGGAGGTGGTTATTATTTGACAGTTGATGAGGCAAGACCTCGAGCTGATAATCAAGGTGCAAGTGGCGGTAGGGGTGGTGGAAGGAGTGGAGGCAGAGGTGGCGGCAGAGGTGGCGGCGGTCAATTTGGTGGCGGTCGTGGAAGAGGTGGTCGTGGAAGAGGAGGTGGTGGCAGGGGCCGTGGCACTCCCAACAAACCAAGTCTTGCTGCTCCAGGCACAGGGACGAAGACCACATTCGGGGATGATGATTAA 2193 0.4583 MGKSSKKSAPKVDPAPAVVPPPKSAKKGTRGKREAEDELEKLVSAKKQKRDEVPVKKIAKVQKNKKESSSDDSSSSASEEDKKTAKKAVLPSKTKPSKNGALSGRVNKGKPASESSDDDSDSDDAGKSKVAPAAGKNGALLTKKKAESSASSDTDSSSDEDNDVRTKVAPLSKKAPVAAAKKDESDTESDSSSDEDDVPTKSSKKLPAAGKSIPAKKIESSDDTSSDSSSDEDDEPPAASKKLPATAVPSKKKAESSESSEDESSESSDDDNVKKPSVKAVSKPSTAPKVESSKSSDSDSSSSEEDNKNKKGANHASNIKPAKASEKISKLKESSDDTDSDDEEESSDGDSEDEKKTAPKANAKAAAAVKTAKEESSESSSENDSSEDEKTAPKSNIKASAGAKTVKKESSEGSSEDDSSEDEDKMDVDEDSSSEESEEEPQQKKAKDVEMVDTASAKSSGKKAPSTPVTPKVQNTTSKTLFVGNLSYNVERTDVENFFKDCGEVVDVRLASDETGRFKGFGHVEFATAEAAQNALELNGEELLQRPVKLDLARERGAYTPNSSNWSNSFQKGGHAQAHTVFIKGFDTSQGEDEIKTNLREHFNCGEITRISVPKDYETGAAKGYAYMDFKDVNAFNKALELSGSELGGGYYLTVDEARPRADNQGASGGRGGGRSGGRGGGRGGGGQFGGGRGRGGRGRGGGGRGRGTPNKPSLAAPGTGTKTTFGDDD 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1184g00024 730 MobiDBLite consensus disorder prediction 111 126 - -
Pral1184g00024 730 MobiDBLite consensus disorder prediction 375 394 - -
Pral1184g00024 730 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 579 660 IPR000504 GO:0003723
Pral1184g00024 730 SMART rrm1_1 480 551 IPR000504 GO:0003723
Pral1184g00024 730 SMART rrm1_1 580 656 IPR000504 GO:0003723
Pral1184g00024 730 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 581 649 IPR000504 GO:0003723
Pral1184g00024 730 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 548 IPR000504 GO:0003723
Pral1184g00024 730 MobiDBLite consensus disorder prediction 459 473 - -
Pral1184g00024 730 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 599 699 - -
Pral1184g00024 730 MobiDBLite consensus disorder prediction 661 730 - -
Pral1184g00024 730 MobiDBLite consensus disorder prediction 27 88 - -
Pral1184g00024 730 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 479 555 IPR000504 GO:0003723
Pral1184g00024 730 MobiDBLite consensus disorder prediction 298 313 - -
Pral1184g00024 730 Coils Coil 32 52 - -
Pral1184g00024 730 CDD RRM2_NUCLs 580 658 IPR034350 -
Pral1184g00024 730 Gene3D - 402 562 IPR012677 -
Pral1184g00024 730 Gene3D - 563 678 IPR012677 -
Pral1184g00024 730 CDD RRM1_NUCLs 480 556 IPR034349 -
Pral1184g00024 730 FunFam Nucleolin 2 564 709 - -
Pral1184g00024 730 SUPERFAMILY RNA-binding domain, RBD 468 569 IPR035979 GO:0003676
Pral1184g00024 730 FunFam Nucleolin 2 453 563 - -
Pral1184g00024 730 MobiDBLite consensus disorder prediction 177 202 - -
Pral1184g00024 730 MobiDBLite consensus disorder prediction 415 437 - -
Pral1184g00024 730 MobiDBLite consensus disorder prediction 1 473 - -
Pral1184g00024 730 SUPERFAMILY RNA-binding domain, RBD 569 691 IPR035979 GO:0003676
Pral1184g00024 730 MobiDBLite consensus disorder prediction 438 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1184g00024 Pral-Chr1184 139753 146116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1184g00024 471 647 Eukaryotic Initiation Factors Gene Family AT4G34110 28.729 5.92e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1184g00024 K11294 - qsa:O6P43_026102 406.371