Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1184g00023 ATGGGCAAATCCAGCAAGAAATCAGCTCCCAAAGTTGATCCTGCTCCGGCTGTTGTTCCGCCTCCGAAGTCTGCAAAGAAAGGCAAGAGGGAAGCTGAGGATGAACTTGAGAAGCTAGTGAGTGCAAAGAAGCAGAAGAGAGATGAAGTTCCTGTGAAGAAGATTGCCAAGGTGCAGAAGAACAAGAAGGAAAGTAGTTCAGATGATTCCTCTTCATCAGCTTCTGAGGAAGACAAGAAAACTGCCAAAAAAGCTGTTCTTCCATCAAAGACAAAACCTTCTAAAAATGGTGCTCTGAGTGGCCGGGTGAACAAAGGCAAGCCAGCTTCTGAATCCTCTGATGATGACTCCGACAGTGATGATGCTGGAAAATCCAAGGTAGCCCCTGCTGCTGGTAAGAATGGGGCTCTTTTGACGAAGAAGAAGGCCGAGTCAAGTGCCAGCTCAGATACTGATAGCAGTTCAGATGAAGACAATGATGTGAGAACTAAAGTTGCCCCTCTATCCAAGAAGGCACCTGTTGCTGCAGCTAAGAAAGATGAATCAGACACGGAATCTGACAGCAGCTCTGATGAGGATGATGTCCCCACTAAATCATCCAAGAAGTTGCCTGCTGCAGGTAAAAGTATACCTGCTAAAAAAATTGAGTCAAGTGACGATACATCCTCTGATAGTAGCTCAGATGAAGATGATGAGCCACCTGCTGCATCTAAGAAGTTGCCTGCAACAGCAGTTCCTTCCAAGAAGAAGGCTGAGAGCAGTGAAAGCTCCGAAGATGAATCAAGTGAAAGCTCTGATGATGATAATGTAAAGAAGCCTTCTGTCAAAGCTGTTTCCAAGCCTTCCACTGCTCCAAAGGTTGAATCTAGTAAGAGCTCAGATTCTGATAGCAGTAGCTCTGAGGAAGACAACAAAAATAAAAAGGGAGCCAATCATGCTTCCAATATCAAGCCAGCAAAGGCTTCTGAGAAGATTTCCAAGTTAAAGGAGAGTTCTGATGACACTGATTCTGATGATGAGGAGGAATCTTCTGACGGTGATTCTGAGGATGAGAAGAAAACCGCTCCCAAGGCTAATGCTAAAGCAGCTGCTGCTGTGAAGACAGCCAAAGAGGAGTCTAGTGAAAGTTCATCTGAAAACGACTCTTCAGAAGATGAGAAAACTGCTCCCAAGTCTAATATTAAAGCATCTGCTGGTGCAAAGACAGTTAAAAAGGAGTCTAGTGAAGGTTCATCTGAAGATGACTCTTCGGAAGATGAGGATAAGATGGATGTTGACGAGGATAGTAGTTCTGAAGAAAGTGAGGAGGAGCCGCAACAGAAAAAGGCTAAGGATGTGGAGATGGTTGATACTGCATCAGCGAAGTCAAGTGGAAAGAAAGCTCCCAGCACCCCAGTTACTCCCAAAGTGCAGAATACCACGTCAAAGACTCTTTTTGTTGGAAATTTGTCATATAATGTAGAACGGACTGATGTGGAAAACTTCTTTAAAGATTGTGGAGAAGTGGTAGATGTCCGTTTGGCTTCAGATGAAACTGGGAGATTTAAAGGCTTTGGGCATGTTGAATTTGCCACAGCTGAAGCAGCACAAAATGCCCTTGAGCTGAATGGTGAAGAATTGCTTCAGCGTCCTGTCAAACTTGATTTAGCTCGTGAAAGGGGAGCATATACCCCCAATAGCAGCAACTGGAGCAATTCATTCCAGAAAGGAGGACATGCTCAAGCTCATACAGTATTCATTAAGGGTTTTGATACATCCCAAGGAGAAGATGAGATTAAGACTAACCTGAGAGAGCATTTCAACTGTGGAGAGATTACAAGGATATCAGTTCCTAAAGATTACGAGACTGGTGCTGCCAAGGGGTATGCCTACATGGATTTCAAGGATGTTAATGCCTTCAACAAAGCGCTAGAATTGAGTGGTAGTGAGCTTGGAGGTGGTTATTATTTGACAGTTGATGAGGCAAGACCTCGAGCTGATAATCAAGGTGCAAGTGGCGGTAGGGGTGGTGGAAGGAGTGGAGGCAGAGGTGGCGGCAGAGGTGGCGGCGGTCAATTTGGTGGCGGTCGTGGAAGAGGTGGTCGTGGAAGAGGAGGTGGTGGCAGGGGCCGTGGCACTCCCAACAAACCAAGTCTTGCTGCTCCAGGCACAGGGACGAAGACCACATTCGGGGATGATGATTAA 2184 0.4579 MGKSSKKSAPKVDPAPAVVPPPKSAKKGKREAEDELEKLVSAKKQKRDEVPVKKIAKVQKNKKESSSDDSSSSASEEDKKTAKKAVLPSKTKPSKNGALSGRVNKGKPASESSDDDSDSDDAGKSKVAPAAGKNGALLTKKKAESSASSDTDSSSDEDNDVRTKVAPLSKKAPVAAAKKDESDTESDSSSDEDDVPTKSSKKLPAAGKSIPAKKIESSDDTSSDSSSDEDDEPPAASKKLPATAVPSKKKAESSESSEDESSESSDDDNVKKPSVKAVSKPSTAPKVESSKSSDSDSSSSEEDNKNKKGANHASNIKPAKASEKISKLKESSDDTDSDDEEESSDGDSEDEKKTAPKANAKAAAAVKTAKEESSESSSENDSSEDEKTAPKSNIKASAGAKTVKKESSEGSSEDDSSEDEDKMDVDEDSSSEESEEEPQQKKAKDVEMVDTASAKSSGKKAPSTPVTPKVQNTTSKTLFVGNLSYNVERTDVENFFKDCGEVVDVRLASDETGRFKGFGHVEFATAEAAQNALELNGEELLQRPVKLDLARERGAYTPNSSNWSNSFQKGGHAQAHTVFIKGFDTSQGEDEIKTNLREHFNCGEITRISVPKDYETGAAKGYAYMDFKDVNAFNKALELSGSELGGGYYLTVDEARPRADNQGASGGRGGGRSGGRGGGRGGGGQFGGGRGRGGRGRGGGGRGRGTPNKPSLAAPGTGTKTTFGDDD 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1184g00023 727 FunFam Nucleolin 2 450 560 - -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 658 727 - -
Pral1184g00023 727 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 578 646 IPR000504 GO:0003723
Pral1184g00023 727 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 545 IPR000504 GO:0003723
Pral1184g00023 727 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 595 696 - -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 412 434 - -
Pral1184g00023 727 SUPERFAMILY RNA-binding domain, RBD 465 566 IPR035979 GO:0003676
Pral1184g00023 727 CDD RRM2_NUCLs 577 655 IPR034350 -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 435 449 - -
Pral1184g00023 727 CDD RRM1_NUCLs 477 553 IPR034349 -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 295 310 - -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 108 123 - -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 372 391 - -
Pral1184g00023 727 FunFam Nucleolin 2 561 706 - -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 174 199 - -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 1 469 - -
Pral1184g00023 727 Coils Coil 25 49 - -
Pral1184g00023 727 MobiDBLite consensus disorder prediction 24 85 - -
Pral1184g00023 727 SMART rrm1_1 477 548 IPR000504 GO:0003723
Pral1184g00023 727 SMART rrm1_1 577 653 IPR000504 GO:0003723
Pral1184g00023 727 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 576 657 IPR000504 GO:0003723
Pral1184g00023 727 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 476 552 IPR000504 GO:0003723
Pral1184g00023 727 SUPERFAMILY RNA-binding domain, RBD 566 688 IPR035979 GO:0003676
Pral1184g00023 727 Gene3D - 421 557 IPR012677 -
Pral1184g00023 727 Gene3D - 558 675 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1184g00023 Pral-Chr1184 139746 146116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1184g00023 468 644 Eukaryotic Initiation Factors Gene Family AT4G34110 28.729 5.94e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1184g00023 K11294 - qsa:O6P43_026102 409.838