Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1184g00014 ATGGGTCGAGGGAAGATAGAGATCAAGAGGATTCAGAACACGACCACCAGACAGGTGACCTTCTCAAAACGCAGAGCTGGACTTGTGAAAAAGACTCATGAACTTTCTGTTCTCTGTGATGCTCAAATTGGCCTCATCATCTTTTCTAGCACCGGCAAGTTGTTTCAGTACTGCAGCGAACCTTTCAGGATGGAGCAGATCATTGAAAAATACCAGAAAGCTACAGGAGTACGCATACCTGAACACGATAGTCGGGAAGATTTAGTGAGTGAGATGGCAATGCTGAGGCAGGAGACTCTGCGCCTTGAACTGGGAATTCAAAGGTACATCGGAGACAGCATGGGCAGTTTGCAGTACGAGGAATTGGCTAAACTCGAACAAGACCTTGAGATATCTGTCACCAAGGTCCGAAATCGCAAGAATGATCTGTTGCAACAGCAGCTGGATAATCTGCGAAGAAAGGAAAGAATGATGGAAGAAGAGAACAGCTACCTGTCGCAGTGGATTCAGGAGCAGCGAGGGGGAGGAGGAGTGATGGAGAATGATGGAGAAGGACAGCAAATGATGGACCAGTTGCCATTCTATGAGGGCCAGACTTCTCTTCAGCTTGCTCCTCTCCACCTTCATCCCTATCTCCAGCTTGCCCAGCCCACCATTCATGACGCTTCTAATTCTCATCCCCACTAA 687 0.4803 MGRGKIEIKRIQNTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSSTGKLFQYCSEPFRMEQIIEKYQKATGVRIPEHDSREDLVSEMAMLRQETLRLELGIQRYIGDSMGSLQYEELAKLEQDLEISVTKVRNRKNDLLQQQLDNLRRKERMMEEENSYLSQWIQEQRGGGGVMENDGEGQQMMDQLPFYEGQTSLQLAPLHLHPYLQLAQPTIHDASNSHPH 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1184g00014 228 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Pral1184g00014 228 Pfam K-box region 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1184g00014 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1184g00014 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1184g00014 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1184g00014 228 Coils Coil 141 161 - -
Pral1184g00014 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1184g00014 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1184g00014 228 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pral1184g00014 228 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pral1184g00014 228 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1184g00014 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1184g00014 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral1184g00014 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1184g00014 Pral-Chr1184 96231 98538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1184g00014 1 221 MADS-box Gene Family AT5G23260 48.980 2.60e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1184g00014 K-box 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1184g00014 - - pcin:129321394 332.028