Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral1173g00008 | ATGGCATTTACAGGAACATTGGATAAATGCAATGCATGTGATAAGACTGTGTATGTGGTGGATCTGTTGTCTCTTGAGGGAGTTCCTTACCATAAATCTTGCTTTAGATGCAGTCACTGCAAGGGGTTCCTTTCGATGAGTAGCTACTCCTCAATGGATGGAGTTCTGTATTGCAAGCCTCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTCACACAGCAAAGTCTTCTGAAAAATCACATGAGACGAGCAAGAACTCAAATAAACTCTCTTCATTGTTCAGTGGAACCCAGGACAAATGTGCAGTTTGCACTAAAACTGTCTATCCTCTGGAAAAGGTGACACTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTCACACACTCCTCCTATGCTGCACTTGACGGTGTCCTGTATTGCAGGCACCACTTTGCTCAACTTTTCATGGAGAAAGGAGATTACAACCATGTCAAGCAAGTCACTGCTCACAAAAAGAACACTGCTTCTCATGATCAGTCTGACCACCTTGCAGATGGCTCTCACTCAGATAAACATCCATCTCAGGACCAAAATGACGATGACACTAAACATGAACAACAAGATGCACAATCTTGA | 657 | 0.4323 | MAFTGTLDKCNACDKTVYVVDLLSLEGVPYHKSCFRCSHCKGFLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFHTAKSSEKSHETSKNSNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGDYNHVKQVTAHKKNTASHDQSDHLADGSHSDKHPSQDQNDDDTKHEQQDAQS | 218 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral1173g00008 | 218 | PANTHER | OS06G0237300 PROTEIN | 6 | 98 | - | - | |
| Pral1173g00008 | 218 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Pral1173g00008 | 218 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 132 | 171 | - | - | |
| Pral1173g00008 | 218 | MobiDBLite | consensus disorder prediction | 176 | 218 | - | - | |
| Pral1173g00008 | 218 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Pral1173g00008 | 218 | ProSiteProfiles | LIM domain profile. | 104 | 164 | IPR001781 | - | |
| Pral1173g00008 | 218 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Pral1173g00008 | 218 | Pfam | LIM domain | 106 | 161 | IPR001781 | - | |
| Pral1173g00008 | 218 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Pral1173g00008 | 218 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Pral1173g00008 | 218 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Pral1173g00008 | 218 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 2 | 35 | - | - | |
| Pral1173g00008 | 218 | Gene3D | Cysteine Rich Protein | 5 | 72 | - | - | |
| Pral1173g00008 | 218 | Gene3D | Cysteine Rich Protein | 100 | 170 | - | - | |
| Pral1173g00008 | 218 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Pral1173g00008 | 218 | SMART | lim_4 | 105 | 157 | IPR001781 | - | |
| Pral1173g00008 | 218 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 98 | 131 | - | - | |
| Pral1173g00008 | 218 | FunFam | LIM domain and actin-binding 1 | 100 | 170 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral1173g00008 | Pral-Chr1173 | 52739 | 54297 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Pral1173g00008 | LIM | 1.8e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral1173g00008 | - | K09377 | gmx:100788569 | 333.183 |