LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1173g00005	ATGAACAATAGAGCTAGGTATCCACCTGGGATTGGCGTAGGTCGGGGGGGAGGCATGAACTCGAACCCTGCGTTTCAACCGCGACCCCCTCAGCAACAGTATGTGCAAAGGCACTTAGTGCAGAACCAACAGCAGTATCCGCATCAGTATCAACAGTACCAACAGCAACATCAGCAGTTACAACAGCAGCAGCAGCAGCAACAACAACAATGGCTTAGAAGAACGCAATTGATTGGTGCTGATTCTAACGTAGTTGACGAGGTCGAGAAGACTGTGCAGTCTGAAGCCGTTGATTCGAGTTCTCAAGATTGGAAGGCAAGATTGAAGATACCACCACCTGATACTCGCTATAGGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAGGAAGAAAGTATCCCAATTGCTCTTACTGGTAGTGACATTCTCGCTAGAGCAAAAAATGGAACTGGAAAAACAGCTGCCTTTTGCGTTCCGGCACTAGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGTGAATTGGCTTTGCAAACGTCACAAGTGTGTAAAGAGCTCGGAAAGCATCTGAGTATTCAAGTCATGGTTACGACGGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCCGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTCTGCGTTTTGAAAGACTGTAATATGCTTGTTATGGATGAGGCTGATAAACTTTTGTCACCAGAGTTCCAACCTTCAATAGAGCAATTGATTCATTTCATGCCTCCGAACCGTCAAATCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTTCAGAAACCTTATATCATTAACCTTATGGATGAGTTAACTCTGAAAGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTCAATACACTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATCTTCTGCAATTCGGTGAATCGGGTTGAGCTCCTTGCCAAGAAAATCACAGAACTTGGCTATTCATGCTTCTATATCCATGCAAAGATGTTGCAAGATCATCGAAACAGAGTGTTCCATGACTTCCGCAATGGTGCTTGTAGAAATCTTGTTTGTACGGATCTTTTTACCAGGGGAATAGACATTCAAGCAGTTAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCATCTTGGTCTAGCAGTTAACTTGATCACCTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATTTATTGCCGGTGA	1509	0.4168	MNNRARYPPGIGVGRGGGMNSNPAFQPRPPQQQYVQRHLVQNQQQYPHQYQQYQQQHQQLQQQQQQQQQQWLRRTQLIGADSNVVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLSIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCNMLVMDEADKLLSPEFQPSIEQLIHFMPPNRQILMFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR	502

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1173g00005	502	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	63	501	-	-
	Pral1173g00005	502	SMART	helicmild6	379	460	IPR001650	-
	Pral1173g00005	502	Pfam	Helicase conserved C-terminal domain	354	460	IPR001650	-
	Pral1173g00005	502	FunFam	ATP-dependent RNA helicase DDX6	333	502	-	-
	Pral1173g00005	502	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	198	482	IPR027417	-
	Pral1173g00005	502	CDD	SF2_C_DEAD	340	469	-	-
	Pral1173g00005	502	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	128	156	IPR014014	GO:0003724
	Pral1173g00005	502	Pfam	DEAD/DEAH box helicase	153	317	IPR011545	GO:0003676\|GO:0005524
	Pral1173g00005	502	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	275	283	IPR000629	-
	Pral1173g00005	502	FunFam	ATP-dependent RNA helicase DDX6	109	332	-	-
	Pral1173g00005	502	CDD	DEADc_DDX6	130	330	-	-
	Pral1173g00005	502	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	339	499	IPR001650	-
	Pral1173g00005	502	Gene3D	-	87	332	IPR027417	-
	Pral1173g00005	502	SMART	ultradead3	147	343	IPR014001	-
	Pral1173g00005	502	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	159	329	IPR014001	-
	Pral1173g00005	502	MobiDBLite	consensus disorder prediction	1	30	-	-
	Pral1173g00005	502	Gene3D	-	333	502	IPR027417	-
	Pral1173g00005	502	Coils	Coil	50	70	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1173g00005	Pral-Chr1173	23696	29787	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1173g00005	128	499	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.235	8.59e-96	294

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1173g00005	K12614		-	jre:109009389	882.478