Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1172g00005 ATGGGGAGAGGGAAGATTGCGATTAAGAGGATTGACAATTCAACAAACAGGCAAGTCACTTTCTCGAAGAGAAGAAGTGGTTTGCTCAAGAAAGCCAAGGAGCTTGCCATCCTCTGTGACGCTCAAGTTGGGGTCACTGTCTTCTCTAGCACCGGCAAGCTAATATGGAAGCTCCAGTATGACAGCATGAAGTCAATTATTGACCGCTACAATAAACAAAAAGATCAGGAACACCATCTGCTTATGAATCCAGCTTCAGGAGCTAAGTTTTGGCAGAGAGAAGCAACGGTCTTGAGACAACAGCTGCAACACTTGCAGGAATTGCACAGGCAATTCATGGGTGAACAACTTTCTGGTTTGGAAATTGACGAATTGAAAAGTTTGGAAAATCAACTGGAGATGAGTTTGAAAAATGTTCAGACCAAGAAGGATCAAATTTTGACAGATGAGATTAAAGAGTTACAACACAAGGTATATATATTCAAGAATTCTGTTTCTGATCTTGCCATGTGA 513 0.4133 MGRGKIAIKRIDNSTNRQVTFSKRRSGLLKKAKELAILCDAQVGVTVFSSTGKLIWKLQYDSMKSIIDRYNKQKDQEHHLLMNPASGAKFWQREATVLRQQLQHLQELHRQFMGEQLSGLEIDELKSLENQLEMSLKNVQTKKDQILTDEIKELQHKVYIFKNSVSDLAM 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1172g00005 170 ProSiteProfiles K-box domain profile. 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1172g00005 170 Coils Coil 122 145 - -
Pral1172g00005 170 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pral1172g00005 170 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Pral1172g00005 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Pral1172g00005 170 Coils Coil 88 108 - -
Pral1172g00005 170 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pral1172g00005 170 Pfam K-box region 88 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1172g00005 170 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Pral1172g00005 170 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Pral1172g00005 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1172g00005 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1172g00005 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1172g00005 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1172g00005 Pral-Chr1172 176257 196534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1172g00005 1 158 MADS-box Gene Family AT4G37940 63.924 2.00e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1172g00005 K-box 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1172g00005 K09264 - csav:115718840 219.164