Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1172g00002 ATGGGGAGAGGGAAGATTGCGATAAAGAGGATTGACAATTCAACAAACAGGCAAGTCACTTTCTCAAAGAGACGAAGTGGTTTGCTCAAGAAAGCCAAGGAGCTTGCCATCCTCTGTGACGCACAAGTTGGGGTCATCGTCTTCTCCAGCACCGGCAAGCTCTATGAATATGGAAGCTCCAGCATGAAGTCAACTATTGACCGCTACAATAAACAAAAAGATCAGGAACACCACCCGCTTATGAATCCAGCTTCAGAAGCCAAGTTTTGGCAGAGAGAAGCAACGGTCTTGAGACAACAGCTGCAACACTTGCAGGAATTGCACAGGCAATTCATGGGTGAACAACTTTCTGGTTTGGGAATTAACGAATTGAAAAATTTGGAAAATCAACTGGAGATGAGTTTGAAAAATGTTCAGATCAAGAAGGATCAAATTTTGACAGATGAGATTAAAGAGTTACAACACAAGGGACATCAAATTCGTCAAGAAAATGTGCAACTCCACAAAACAGTAGAAGTCATTAGTAAAGAAAATGCAGAATTACAGACCAAGATTTCTGAAGCAAGCGTTGTGAATGAGGGAAATGGGAATTCTAATCCTACACAGTCTGTCAGCAACAAATATGGATCACATCCACCTATTCATCTCCAGCTGAGCCAGCCACAGTCTCAATCTAGTGAATCACCAGCGAAAACAATGGAGCTGGGATTACAGCTGCTTTAG 723 0.4232 MGRGKIAIKRIDNSTNRQVTFSKRRSGLLKKAKELAILCDAQVGVIVFSSTGKLYEYGSSSMKSTIDRYNKQKDQEHHPLMNPASEAKFWQREATVLRQQLQHLQELHRQFMGEQLSGLGINELKNLENQLEMSLKNVQIKKDQILTDEIKELQHKGHQIRQENVQLHKTVEVISKENAELQTKISEASVVNEGNGNSNPTQSVSNKYGSHPPIHLQLSQPQSQSSESPAKTMELGLQLL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1172g00002 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1172g00002 240 MobiDBLite consensus disorder prediction 189 232 - -
Pral1172g00002 240 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1172g00002 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1172g00002 240 Coils Coil 121 144 - -
Pral1172g00002 240 MobiDBLite consensus disorder prediction 189 240 - -
Pral1172g00002 240 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pral1172g00002 240 Coils Coil 87 107 - -
Pral1172g00002 240 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1172g00002 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1172g00002 240 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pral1172g00002 240 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral1172g00002 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1172g00002 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1172g00002 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1172g00002 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral1172g00002 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral1172g00002 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1172g00002 Pral-Chr1172 114844 123317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1172g00002 1 239 MADS-box Gene Family AT2G14210 57.500 8.33e-83 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1172g00002 K-box 8.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1172g00002 K09264 - gmx:100805092 304.293