Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1172g00001 ATGGGGAAAGCAAAGATTGAGATTAAGAGGATAGAGGATTCAGCAAACAGGCAAGTCACTTTCTCAAAGAGACGAAGTGGGTTGCTTAAGAAAGCAAGAGAGCTCGCGATCCTCTGCGACGCACAAGTTGGGGTGCTTGTGTTCTCTAGCACTGGCAGACTCTATGAATATGGGAGCTCCAGCGTGGAGTCAATTATTGACCGCTATAATAAACAGAAAGATCACGAACACAATCCGCTTGTGAATCCAGCTTCAGAAGCCAAGTTTTGGCAGAGAGAAGCAACGATCTTGAGGCAAGAACTTCAACAGTTGCAGGAATTGCACAGGCGAGTTGCGGGAGAAGAACTTTCTGGTTTGGGAGTTAATGAATTGAAAACTTTGGAAAATCAACTAGAGATGAGGTTAAAAAATGTCCAGATCAAGAAGGTATGA 432 0.4398 MGKAKIEIKRIEDSANRQVTFSKRRSGLLKKARELAILCDAQVGVLVFSSTGRLYEYGSSSVESIIDRYNKQKDHEHNPLVNPASEAKFWQREATILRQELQQLQELHRRVAGEELSGLGVNELKTLENQLEMRLKNVQIKKV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1172g00001 143 Coils Coil 121 141 - -
Pral1172g00001 143 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1172g00001 143 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pral1172g00001 143 ProSiteProfiles K-box domain profile. 87 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1172g00001 143 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1172g00001 143 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1172g00001 143 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1172g00001 143 Pfam K-box region 84 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1172g00001 143 Coils Coil 87 114 - -
Pral1172g00001 143 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral1172g00001 143 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral1172g00001 143 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Pral1172g00001 143 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1172g00001 143 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 140 - -
Pral1172g00001 143 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1172g00001 Pral-Chr1172 100121 104614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1172g00001 1 142 MADS-box Gene Family AT4G37940 64.085 8.86e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1172g00001 K-box 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1172g00001 K09264 - zju:112492935 191.815