Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1170g00009 ATGTCTGAAACCGACCTCTCTCCCATATCTCACGTGATCTCACGTGTCACCACACCTTCTTCCCCGAAGGTTCCATCTTCAAACAATGTCACGAAGGTTAAACTCAGAAGAAAAACCAATGATCTTGATGGAGCATATGATCACGAGATATCATCTTCGGCCAGTCCTTATTACAAGGGTCTCCTTTATCAACCTATCGTTATCGACGACGAATATATTTCGCCGAATCATGATCATCATCAGAACCATGATCTGAACAGTGGCCATAGTAATTCTGGGGTTCCGGCGACTTCTGGATCTAGTCCATACTACAGAGGGCTTACAGATTTTTCACTGGTTATTCATGGAGGACGGCACCTACAATCGCATGATGATTATGGCTATGGAATTCATGACGTTGAAGCAGCGTACGAGTGTAATCCTTATTTCAGAGGCCTCCTCACTGATAGCTCTCTGGCTATGGCGATTCGTAAACCTGACGGAGGAGGAGGAGGAGCATCGTGTGGGCATGGTGGTGTTATGCTACCTTTTGGGTTCAGCATGAATTTATGCTTAGGTGGTAAGGATGATATTTTGAACGACATCACAGCTCAGATGGAGTCGGAAAGGCAGCGTACTTTATCGTCGTTATCGCCACCGGCGCCCATACCGTTAACGCAGCCTTCGTTACCACTATCAGCACCGCCCCCGTCTGTGATTCCATCCAAAGGGACGACTTCTTTAAGTACGGAGCTGAAAGTAGAAGATGGGAAGCCTATGGGCGGAGGAGAATCAGAAGAAACTGCCCATGAGGAAAAAGCTGTGGATATTAAGAATAATAAGGAGGAGGCCATGAATGAATCTGGTTTACCAAATGAGGAGGTAATAAGGAAGAAGAAGTCCTTGAGAGAGAGTGTTTCCAATATTTCTGAACAAACAGCGTCTGCATCATCATCATCATCAGAATCTGAATCTTCAAGTAATAAAGATGTTCCCCAGGAGATTAAAGTAGAAGAAGAAGAAGAAGGAAGCTTGAAAGAATATGTGTGGGCTAACAAGTATCAACCCAAGGCATTGCAACAATTTATCTGCCACAAACAGATTGTTTCTCAGCTATTAACGATGGTAAAAGAGGGATCTTCTTGTGACCATTTTATTTTTGAAGGACCACCTGGTGTAGGAAAAAGAACCATGATACGAGCTCTACTTCGAGAGGTCTTTGGCAACGACGTTGTTAAGGTGACTGAGGAATATAGAACAGTTTTATTAAAGATTGTTGAGGTTTTGAAATACATAGGGAAAGAAGAAAGGAAAGAATTGCCCCTTGAATTCCTTACCAAGGTTGTTGAGAAGTCAAAGAACAATCTTCGTCAGGCCATTCGTTCTTTGGAGGCCACTTGCCAGAACAAGCTATACATGATTCATGTGAAGCTCGAAAGTCTCATGATTCACAAGGTTTCACCTGACTTTGTTTACAAGTACTTGGTATCAGAGCTAAAATCTCTGGTGGATGAATCACTAAGACCAGGGCTTGAAAAACTCAAGAAGGAGTACAAACAT 1539 0.4314 MSETDLSPISHVISRVTTPSSPKVPSSNNVTKVKLRRKTNDLDGAYDHEISSSASPYYKGLLYQPIVIDDEYISPNHDHHQNHDLNSGHSNSGVPATSGSSPYYRGLTDFSLVIHGGRHLQSHDDYGYGIHDVEAAYECNPYFRGLLTDSSLAMAIRKPDGGGGGASCGHGGVMLPFGFSMNLCLGGKDDILNDITAQMESERQRTLSSLSPPAPIPLTQPSLPLSAPPPSVIPSKGTTSLSTELKVEDGKPMGGGESEETAHEEKAVDIKNNKEEAMNESGLPNEEVIRKKKSLRESVSNISEQTASASSSSSESESSSNKDVPQEIKVEEEEEGSLKEYVWANKYQPKALQQFICHKQIVSQLLTMVKEGSSCDHFIFEGPPGVGKRTMIRALLREVFGNDVVKVTEEYRTVLLKIVEVLKYIGKEERKELPLEFLTKVVEKSKNNLRQAIRSLEATCQNKLYMIHVKLESLMIHKVSPDFVYKYLVSELKSLVDESLRPGLEKLKKEYKH 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1170g00009 513 Coils Coil 260 280 - -
Pral1170g00009 513 Coils Coil 435 455 - -
Pral1170g00009 513 MobiDBLite consensus disorder prediction 250 276 - -
Pral1170g00009 513 MobiDBLite consensus disorder prediction 200 332 - -
Pral1170g00009 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 461 IPR027417 -
Pral1170g00009 513 Gene3D - 341 479 IPR027417 -
Pral1170g00009 513 MobiDBLite consensus disorder prediction 73 98 - -
Pral1170g00009 513 Coils Coil 285 305 - -
Pral1170g00009 513 MobiDBLite consensus disorder prediction 299 321 - -
Pral1170g00009 513 MobiDBLite consensus disorder prediction 1 28 - -
Pral1170g00009 513 MobiDBLite consensus disorder prediction 214 231 - -
Pral1170g00009 513 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 343 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1170g00009 Pral-Chr1170 171757 177200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1170g00009 342 413 Core DNA Replication Machinery Family AT5G27740 41.667 4.87e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1170g00009 K10756 - gmx:102664389 134.035