Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1165g00003 ATGCAGCCTCGTAGCAGAGAAATGCAAGGAATAAACTCTCTCTTGAACTCTTCTCAGATTCCTCTCTCCGACCTCCACCAGATCCAAAATTCTCAGATGCATCCTCCTCCTCACCTTACTAACCCTTCTTCTTCTTCCTCCTCTCACTTCGACCCCTCTTCTTCCCACGACGATTTTCTCGACCAAATGCTCTCCAACCTTCCATCTTCCTCTTGGCCGGACCTTAACCCCAAGCCCTTCTGGGACGATACGCCTCCGCCGCCCCACGCCGCCGAGAATGTTGCGTTTCAGTATGATGACCAAGCCAGCTTGGCTTCCAAGTTCCGAAACCACCGGATCAGTAGTGATGGTGGTAACCCCTCTACCACGTCGTCGACAGCGGCTCTGATGCTCCAGGCTCAGCAGCAGCTTCTGATGTCCCGAGGTGTCGCCGGAGCCGGAGAATCAGGCCTCCTTCCGATGCCGTTGTCGTTGGGCGGCGGAGACGTTGACCGCTCCAGAAACGACGTCGTGGATGGCTCGTCGTTCAAATCTCCTAATCCGGGTGGCGAGAGTTCAGTTCAAGCCCTGTATAACGGCTTCGCCGGTTCTATGCATGGCGGTGGTCAAGTTTCGAATCAGACCCAGCATTTTCCTCATCATCCACAGGGCCAGAATCTGGGCGCAACGACCCAAGCTCCGGCGAGCAGTACTCCGGCGCAACCAAGGCAGAGAGTTAGGGCAAGGAGAGGTCAAGCGACGGACCCACACAGCATCGCCGAGAGGTTACGAAGGGAGAGGATCGCAGAGCGAATGAAGGCACTGCAGGAGCTAGTTCCCAATGCCAACAAGACAGACAAGGCGTCGATGCTGGATGAGATCATCGATTATGTGAAGTTTCTACAGCTGCAAGTTAAGGTATTGAGTATGAGTAGGTTGGGCGGTGCGGCTGCCGTGGCTCCCCTTGTTGCTGATATGGCTTCTGAGGCAGCCAGTGACAGCGGCCAGGCCCCTCCCAACGGCAACCAAACGCCGTCGTCAACCTCCGCCAACGACACCATCACCATGACGGAGCAACAGGTGGCCAAGCTTATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTGCAGGGCAAGGGCCTCTGCCTCATGCCCATCTCCCTCGCCACCGCCATCTCCACCGCCACCTGTCATTCCAGGAGCGCCCTCATCAACCAGAAAGGGCCGTCGTCTCCCAACATGTCGGTCTTGACCGTGCAGTCGGCGACGGCCGGTATTGCCGCCGCGGAGAGCTCCGTCAAAGAGGGGGCCTCCGTTTCGAAGCCGTGA 1308 0.5757 MQPRSREMQGINSLLNSSQIPLSDLHQIQNSQMHPPPHLTNPSSSSSSHFDPSSSHDDFLDQMLSNLPSSSWPDLNPKPFWDDTPPPPHAAENVAFQYDDQASLASKFRNHRISSDGGNPSTTSSTAALMLQAQQQLLMSRGVAGAGESGLLPMPLSLGGGDVDRSRNDVVDGSSFKSPNPGGESSVQALYNGFAGSMHGGGQVSNQTQHFPHHPQGQNLGATTQAPASSTPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMASEAASDSGQAPPNGNQTPSSTSANDTITMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRSALINQKGPSSPNMSVLTVQSATAGIAAAESSVKEGASVSKP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1165g00003 435 MobiDBLite consensus disorder prediction 172 192 - -
Pral1165g00003 435 Gene3D - 240 302 IPR036638 GO:0046983
Pral1165g00003 435 MobiDBLite consensus disorder prediction 326 344 - -
Pral1165g00003 435 FunFam Transcription factor bHLH66 242 307 - -
Pral1165g00003 435 Pfam Helix-loop-helix DNA-binding domain 250 295 IPR011598 GO:0046983
Pral1165g00003 435 MobiDBLite consensus disorder prediction 323 344 - -
Pral1165g00003 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Pral1165g00003 435 MobiDBLite consensus disorder prediction 160 252 - -
Pral1165g00003 435 SMART finulus 251 300 IPR011598 GO:0046983
Pral1165g00003 435 MobiDBLite consensus disorder prediction 199 236 - -
Pral1165g00003 435 MobiDBLite consensus disorder prediction 29 68 - -
Pral1165g00003 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 305 IPR036638 GO:0046983
Pral1165g00003 435 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1165g00003 Pral-Chr1165 17341 21107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1165g00003 232 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.667 3.35e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1165g00003 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1165g00003 - - cave:132185902 474.552