Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1165g00002 ATGCAGCCTCGTAGCAGAGAAATGCAAGGAATAAACTCTCTCTTGAACTCTTCTCAGATTCCTCTCTCCGACCTCCACCAGATCCAAAATTCTCAGATGCATCCTCCTCCTCACCTTACTAACCCTTCTTCTTCTTCCTCCTCTCACTTCGACCCCTCTTCTTCCCACGACGATTTTCTCGACCAAATGCTCTCCAACCTTCCATCTTCCTCTTGGCCGGACCTTAACCCCAAGCCCTTCTGGGACGATACGCCTCCGCCGCCCCACGCCGCCGAGAATGTTGCGTTTCAGTATGATGACCAAGCCAGCTTGGCTTCCAAGTTCCGAAACCACCGGATCAGTAGTGATGGTGGTAACCCCTCTACCACGTCGTCGACAGCGGCTCTGATGCTCCAGGCTCAGCAGCAGCTTCTGATGTCCCGAGGTGTCGCCGGAGCCGGAGAATCAGGCCTCCTTCCGATGCCGTTGTCGTTGGGCGGCGGAGACGTTGACCGCTCCAGAAACGACGTCGTGGATGGCTCGTCGTTCAAATCTCCTAATCCGGGTGGCGAGAGTTCAGTTCAAGCCCTGTATAACGGCTTCGCCGGTTCTATGCATGGCGGTGGTCAAGTTTCGAATCAGACCCAGCATTTTCCTCATCATCCACAGGGCCAGAATCTGGGCGCAACGACCCAAGCTCCGGCGAGCAGTACTCCGGCGCAACCAAGGCAGAGAGTTAGGGCAAGGAGAGGTCAAGCGACGGACCCACACAGCATCGCCGAGAGGTTACGAAGGGAGAGGATCGCAGAGCGAATGAAGGCACTGCAGGAGCTAGTTCCCAATGCCAACAAGACAGACAAGGCGTCGATGCTGGATGAGATCATCGATTATGTGAAGTTTCTACAGCTGCAAGTTAAGGTATTGAGTATGAGTAGGTTGGGCGGTGCGGCTGCCGTGGCTCCCCTTGTTGCTGATATGGCTTCTGAGCAGGCAGCCAGTGACAGCGGCCAGGCCCCTCCCAACGGCAACCAAACGCCGTCGTCAACCTCCGCCAACGACACCATCACCATGACGGAGCAACAGGTGGCCAAGCTTATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTGCAGGGCAAGGGCCTCTGCCTCATGCCCATCTCCCTCGCCACCGCCATCTCCACCGCCACCTGTCATTCCAGGAGCGCCCTCATCAACCAGAAAGGGCCGTCGTCTCCCAACATGTCGGTCTTGACCGTGCAGTCGGCGACGGCCGGTATTGCCGCCGCGGAGAGCTCCGTCAAAGAGGGGGCCTCCGTTTCGAAGCCGTGA 1311 0.5759 MQPRSREMQGINSLLNSSQIPLSDLHQIQNSQMHPPPHLTNPSSSSSSHFDPSSSHDDFLDQMLSNLPSSSWPDLNPKPFWDDTPPPPHAAENVAFQYDDQASLASKFRNHRISSDGGNPSTTSSTAALMLQAQQQLLMSRGVAGAGESGLLPMPLSLGGGDVDRSRNDVVDGSSFKSPNPGGESSVQALYNGFAGSMHGGGQVSNQTQHFPHHPQGQNLGATTQAPASSTPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMASEQAASDSGQAPPNGNQTPSSTSANDTITMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRSALINQKGPSSPNMSVLTVQSATAGIAAAESSVKEGASVSKP 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1165g00002 436 MobiDBLite consensus disorder prediction 172 192 - -
Pral1165g00002 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 305 IPR036638 GO:0046983
Pral1165g00002 436 Gene3D - 240 302 IPR036638 GO:0046983
Pral1165g00002 436 FunFam Transcription factor bHLH66 242 307 - -
Pral1165g00002 436 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 386 - -
Pral1165g00002 436 Pfam Helix-loop-helix DNA-binding domain 250 295 IPR011598 GO:0046983
Pral1165g00002 436 MobiDBLite consensus disorder prediction 323 344 - -
Pral1165g00002 436 MobiDBLite consensus disorder prediction 29 68 - -
Pral1165g00002 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Pral1165g00002 436 MobiDBLite consensus disorder prediction 160 252 - -
Pral1165g00002 436 SMART finulus 251 300 IPR011598 GO:0046983
Pral1165g00002 436 MobiDBLite consensus disorder prediction 199 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1165g00002 Pral-Chr1165 17341 21107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1165g00002 232 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 65.919 4.83e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1165g00002 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1165g00002 - - qsu:111987215 473.781