Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1159g00003 ATGACCAACGCTCTGAAACAACTCACAAAACCTGGGAACCAGATGAATTTCCCCAAAATGTTAAAACAAAAGCATCGTGCCGTTCCTCCTCGTACGAAGCCCCTAGTGTCCAGAAAAGTGCGTATTTTTTATAACGATCCTGAGGCCACAGATTCATCTTCAAGTGAAGATGAAGATGGGTGGGAAAGTAGAAAGTTGAAAAGGGTAAAACGATGTGTTCAAGAGCTCACTCTACCTCCAGTTGCTGAGAAGCTCAAACTTATTGAAACTGACGGCTCTAATCGTAACTTTAATGGCAAGGGAGGTACAGATTGTGAACCAGTTAAACCCACTCCACGGAAGAGACGCGCCTCTTCGCAATACAGAGGCGTCCGACTCAGAAACTCAGGCAAATGGGCTGCGGAGATTCGTCATCCTATCAAGGGTCGTAAATGGTTGGGTACTTTTGATACCCCAGAGGAGGCCTCTCAAGCCTATGAAGCCAAAAGAAGAGAGTTTGAAGCCATGGATTTCTCTAAGAAGAACCTTCCTTCTGTTACTGTTTCTTCATATTCGTCTTCTGCGGAAGACTCATGCAGTGTTATTTCTCAGTCATCACCACCCTCTGTTCTTGAAGTCTATACTTCCATTGGGAATGGTCGTATTTCAACAAAAGAATTCGATCATTTTGAGTCTGCGCTTGCAGCTTTGCAGATGCCGGATTCGGTTTTGTCGACTTCATCACCTTCGTCTTTGAATTCATCAGAGGATTATGAGTCCTCAGGAAATGAAGCCAGTGATCTGGAGCAGCAAGGATTTTGGGGAAACACACGATTTGAGAGCAGCAAAGATTCAAGCAAAGGCGGGAATGATCTGGCGTCGGAACTTGAAGCGAGTATGGAAATACACGATTTGAGTTTGGCTGAAGTGGCAATTCCGGTATGTTCAGAGCCTGATGGGTTTGATTTGGATTGTTTAATGGTGAATGATTGGGAACAGGGATTTGAAGATGACGATGATCTTTCTGGGTTGCTGGGTAATGGAATTGGCGGGTTTAATGACGACGGGCCTTGTGAGCTTCCAGATTTCGATTTTGGTGCAGATGATGAGTTTGCTGGTTGGATTGAGGAATCCCTCAATATTCCATGTGCATGA 1134 0.448 MTNALKQLTKPGNQMNFPKMLKQKHRAVPPRTKPLVSRKVRIFYNDPEATDSSSSEDEDGWESRKLKRVKRCVQELTLPPVAEKLKLIETDGSNRNFNGKGGTDCEPVKPTPRKRRASSQYRGVRLRNSGKWAAEIRHPIKGRKWLGTFDTPEEASQAYEAKRREFEAMDFSKKNLPSVTVSSYSSSAEDSCSVISQSSPPSVLEVYTSIGNGRISTKEFDHFESALAALQMPDSVLSTSSPSSLNSSEDYESSGNEASDLEQQGFWGNTRFESSKDSSKGGNDLASELEASMEIHDLSLAEVAIPVCSEPDGFDLDCLMVNDWEQGFEDDDDLSGLLGNGIGGFNDDGPCELPDFDFGADDEFAGWIEESLNIPCA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1159g00003 377 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Pral1159g00003 377 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Pral1159g00003 377 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Pral1159g00003 377 MobiDBLite consensus disorder prediction 1 34 - -
Pral1159g00003 377 Pfam AP2 domain 120 168 IPR001471 GO:0003700|GO:0006355
Pral1159g00003 377 CDD AP2 119 161 IPR001471 GO:0003700|GO:0006355
Pral1159g00003 377 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 38 243 - -
Pral1159g00003 377 MobiDBLite consensus disorder prediction 238 263 - -
Pral1159g00003 377 MobiDBLite consensus disorder prediction 1 16 - -
Pral1159g00003 377 MobiDBLite consensus disorder prediction 93 122 - -
Pral1159g00003 377 Gene3D AP2/ERF domain 119 177 IPR036955 GO:0003700|GO:0006355
Pral1159g00003 377 MobiDBLite consensus disorder prediction 44 63 - -
Pral1159g00003 377 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Pral1159g00003 377 SUPERFAMILY DNA-binding domain 119 166 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1159g00003 Pral-Chr1159 25107 27321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1159g00003 27 376 AP2-EREBP Transcription Factor Family AT1G68550 32.603 6.71e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1159g00003 - - pcin:129311407 450.284