Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1154g00149 ATGGTTTTTACCTCCATCCCTCCTTATCTTGATCCATCCAACTGGCAACAACAGCAAAGTAATCACCATACTGGCTCTCTCGCCGGCGGTGTGAGTTCTCAGCAGCAGCAACAGCAGCAGCTTCTTTCTCCGCCGCATCCTCCGCCTTCGTTGCCTCCACCGCAGCCTCATGGAGCCGGAGGGACGGGTTCGATCAGGCCAGGTTCCATGGCTGATCGAGCCCGGATGGCGAACATACCCATGCCGGAGGCTGCTCTGAAATGTCCCAGGTGTGAATCTACAAACACCAAGTTTTGTTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACTTGTCGGAGGTACTGGACCCGTGGCGGAGCGCTGAGGAATGTGCCTGTCGGAGGGGGATGCCGGAGGAACAAGAGAAGCAAAGGAAGCAGCTCTAAGTCACCGGCGAGTTCAGATCGTCAAGGTGGGAGCACTAGTTCCAACAACTCCGTCTCTTCTAACAGTAATTCTGCCGGCGACTTAATGGGACTCGCCCCTCATGCGCCACCACTGAGATTTATGTCTCCCTTACTTGCTGATTTTGCTGCTGGTGGAGACATGGGTTTAACCTACGGCGTAAATTACAACGCAATTTCAGCACCAATGGGAGGAGTAGTCGGCGACTTAAATTTCCAACTAGGAAATGCTTTAGGCGGAGGAGGAGGAGGAAGTGGCGGCACTACCACGGCTGCCGGAAGCAGCAGTGGCTCTATGTTATTCGCTCCAGGAGGTTTGGAGCAATGGCGGGTGCCACAAACACAGCAATTTCCTTTCTTGGCTGGACTGGAAGGTTCACAGGGATTGTACTCCTTTGACGGTGGCGCTTCCGCTGGAGAGGGACCGGGATATGGCAGCACGAGTCTTCGGCCAAAGGCGTTGGCGTCGACAACTGCTGGGGTGATAACTCAGCTGGCTTCAGTGAAAATGGAAGACAATAATCGGGAGATGAATTTGTCAAGCCAATTCCTGGGAAGCGACCAGCACTATTGGGGAACTGGTGGTTCTACTTCTGGCTGGACTGATCTTTCTGGATTTAGCTCATCTTCAACTACTAGCAATCCACTATAG 1110 0.5324 MVFTSIPPYLDPSNWQQQQSNHHTGSLAGGVSSQQQQQQQLLSPPHPPPSLPPPQPHGAGGTGSIRPGSMADRARMANIPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPASSDRQGGSTSSNNSVSSNSNSAGDLMGLAPHAPPLRFMSPLLADFAAGGDMGLTYGVNYNAISAPMGGVVGDLNFQLGNALGGGGGGSGGTTTAAGSSSGSMLFAPGGLEQWRVPQTQQFPFLAGLEGSQGLYSFDGGASAGEGPGYGSTSLRPKALASTTAGVITQLASVKMEDNNREMNLSSQFLGSDQHYWGTGGSTSGWTDLSGFSSSSTTSNPL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1154g00149 369 MobiDBLite consensus disorder prediction 144 174 - -
Pral1154g00149 369 MobiDBLite consensus disorder prediction 1 69 - -
Pral1154g00149 369 Pfam Dof domain, zinc finger 85 140 IPR003851 GO:0003677|GO:0006355
Pral1154g00149 369 MobiDBLite consensus disorder prediction 130 176 - -
Pral1154g00149 369 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677|GO:0006355
Pral1154g00149 369 MobiDBLite consensus disorder prediction 9 41 - -
Pral1154g00149 369 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677|GO:0006355
Pral1154g00149 369 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 169 IPR045174 GO:0003700|GO:0006355
Pral1154g00149 369 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1154g00149 Pral-Chr1154 965909 967669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1154g00149 1 348 C2C2-Dof Transcription Factor Family AT5G02460 38.760 3.05e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral1154g00149 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1154g00149 - - cave:132161714 350.132