Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1154g00077 ATGGAACAAGGTCAATTCTGGATGTGGACGAAGAGGAAGTACTCTTTGAGCTCTTGTAATCTCATCACTTCATCATCAACAAAACCCTCTTCTTCTTATGATGATTCGTCATGGGAAGAGCAAGCTTTCGCGGAGGATGCTTCTGGGCCTCTTGGTGGATGCATATGGCCACCCAGATCATACACTTGCAGTTTCTGCAGAAGAGAGTTCAGATCAGCACAAGCTCTAGGAGGCCACATGAATGTTCATAGAAGGGATAGAGCCAGACTGAAGCAACCCTCAAGCCCCCAAAACAATGAACTTCACACAATTCCAAATACTTCTTCTTCACTTATGGGTTTCTTATATCCGTATAATAATAATTGTTCTCCTACCAACAACCCTAATTCTGTTCTTGTTGCTTCACCTTCTAATAAGGCTTTAGTAGCTCCATCGTCAAACACTGAGGAAACCATAATGGTTCCAGCTTACAATTCTTCTTCTATTATTCCCCCCACGGACATAAGGTGGCTTCTAATTATTCTCCTCTCTATTCTTCTTCTAAATCGAACCGCTCAAACTTCGCTGAAGCTGAAGCTGAGAAGATCACAGAGGTATTGGATTGCAGGTGCGAGGATAGTGGAAAATCTGATTGGCTTCTAG 642 0.4283 MEQGQFWMWTKRKYSLSSCNLITSSSTKPSSSYDDSSWEEQAFAEDASGPLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNNELHTIPNTSSSLMGFLYPYNNNCSPTNNPNSVLVASPSNKALVAPSSNTEETIMVPAYNSSSIIPPTDIRWLLIILLSILLLNRTAQTSLKLKLRRSQRYWIAGARIVENLIGF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1154g00077 213 Gene3D Classic Zinc Finger 58 110 - -
Pral1154g00077 213 PANTHER OS07G0101800 PROTEIN 32 146 - -
Pral1154g00077 213 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Pral1154g00077 213 MobiDBLite consensus disorder prediction 84 105 - -
Pral1154g00077 213 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pral1154g00077 213 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Pral1154g00077 213 Pfam C2H2-type zinc finger 61 85 - -
Pral1154g00077 213 SMART c2h2final6 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1154g00077 Pral-Chr1154 470879 471539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1154g00077 29 110 C2H2 Transcription Factor Family AT2G37740 64.634 6.42e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1154g00077 zf-C2H2_6 3.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1154g00077 - - pcin:129289629 239.58