Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1154g00039 ATGTCGAACATACAAATGTCCCATCTGGATTTAGAGCAAGGAGGTTACCATCGTTCGGTGGTCGCAAGTGATGTCAGCGCCGACGGGAGCGTGTGCTTCTCCGACGCCGACGATGGGTCCTGCTACTCTCATTTCTATTCTACCTACGGTGGTTCATACGACGATTGTAGTTTCGCCTGCGTTTCTGATTCTGAGGTTAGGTGTGTTGCTGATTCTAGGAGAGCTTCTTCTGTGACTGATTGTTCGGTGGAAGTTGAAATTGAAAGTGGGGATCCTGAAATTAAGGTGCATTTGGCCAAAGTAGAGAGAGATTGTAGGATTTGTCACTTGGGTTTGGAGAGTGATAGCAATGATGAGTCCGGGGTTCCAATTGAATTGGGATGCTCTTGTAAGGATGATTTAGCTGCTGCTCACAAACACTGCGCTGAGGCCTGGTTCAAGATCAAAGGGAATAGGACCTGTGAAATTTGCCACTCGGTTGCACGGAATGTTTATGGAGGGAACGAGGAGGTGACAGAGCATTCAAGTGATAGCAATAATGCTCCTGCTGCTGCTGCAACAGCAGTGTCCCCACCAGCACCTTCTGCAGAAACTCGAAGATTCTGGCATGGCCATAGGTTCCTGAATTTTCTGCTTGCTTGTATGGTCTTTGCTTTTGTCATATCATGGCTTTTTCACTTTAATGTACCTTCTTCCTAA 699 0.4692 MSNIQMSHLDLEQGGYHRSVVASDVSADGSVCFSDADDGSCYSHFYSTYGGSYDDCSFACVSDSEVRCVADSRRASSVTDCSVEVEIESGDPEIKVHLAKVERDCRICHLGLESDSNDESGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGNEEVTEHSSDSNNAPAAAATAVSPPAPSAETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1154g00039 232 ProSiteProfiles Zinc finger RING-CH-type profile. 97 164 IPR011016 GO:0008270
Pral1154g00039 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Pral1154g00039 232 PANTHER ZINC FINGER, RING-CH-TYPE 21 231 - -
Pral1154g00039 232 MobiDBLite consensus disorder prediction 169 194 - -
Pral1154g00039 232 SMART ringv_2 104 158 IPR011016 GO:0008270
Pral1154g00039 232 SUPERFAMILY RING/U-box 102 161 - -
Pral1154g00039 232 MobiDBLite consensus disorder prediction 169 185 - -
Pral1154g00039 232 Pfam RING-variant domain 105 157 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1154g00039 Pral-Chr1154 197527 201104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1154g00039 63 232 C3H Transcription Factor Family AT5G05830 60.588 3.78e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1154g00039 - - qsa:O6P43_026440 374.785