Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1154g00014 ATGCTTCAGATTCGGCTTAGCAAGGTTCCCGCTTCTGAAGGTTTAGCAGGGGTGAAACCCTCGCCTGTCGAGACTGTTACAGTTACTTGTCCCGATCATCTTGTTCTTGCTGATCTTCCTGTAGCGAAGGGCATAGGTTCAGCAACTGCTACTTCACTGGTGAAGACTCTTGGACGTAGATCTCGCCGCCAATGTGGTGATTGTGTCCACTTCTGTGTTCGTTGTGACTTCCCAATTGCAATCTATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTTGATTGTGCTAGGAGCGATTCAATATGCTACCTGTGTGATGAACGAATCCAGAAAATTCAGACAATCAAAATGTTAGAAGGAATATTCATCTGTGCAGCTCCTCACTGTTTCAAGTCTTTCTTGAAGAAGTCAGAATTTGAAATGCATATCCAAGATGTACATGCTGACCTTCTCCGGCCCAATGTAGATAAAGAAGATGGAAATGAGTCAGAGACAAATAGTGTTCGGCAATCTGCAATGTCAGATGCTTCTGCTCGAGCTCCCCAAAGGCCTGTTTTCTCTCCTGGTTCAAATTCCCAGCTACCTGATCGAGAAGACAAGGCGGGTCAACAACCACCAAGAGATCAACCACCTTCAAGGCCGACTCTGCAGCCAAAGCCACCATCTTTTGGTCAAGTTCAAAATCACTCTGCAGATCTCCAGTCTGGCTCTAATGGAGGTATTCCCCAGGGCTTCTATCAACAAAGTTCTGATATGCAGCGACCTCTGCAAGAACCTTCCCAGTTTCCAGACAGGCATCGAGGAGTCACACCGGAGACACCACTCCCTGATTATCCACCCATGCATTCGTCCCAGACACCCAATTTCGCAGTGCCAGTTAATGCTAACCCAATGTTGAATCCTCCAGTGCCATTTGGTTATCCTCCTTACCCGCCACATGAGGGAGCTCCGCCATTTTATGTGAACCCGTATGATATGCGCCGGCAGGACTCAGCTTCTGAAGGAGGTGGAGACCAGAGTTCCTTACTTGGTTTTCCGCCGGGTGCTGCAGCTGGCACTAATTTTCCAGCAAATTATCCCCAGCCCTTGAATGCAGGAGCTGGGGGCCTACCTTTTGAACAAGGGCACAGTGGTATGGCTATGGATCCACGAGACGCTAAAGGAATGTTGGCACCACATTCCATGCCCCTCCCACCTCCTCCTCCACCACCATTGCCGCCCATGTCCCATCTGAACCAGAAATATTATTCTGGTGAGTTCGGGCATAATGGACATGGTTATGGTTGGCAGCATGACAATCGTGAAACCTTTGGTGGTCAGGACTAG 1329 0.4913 MLQIRLSKVPASEGLAGVKPSPVETVTVTCPDHLVLADLPVAKGIGSATATSLVKTLGRRSRRQCGDCVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKMLEGIFICAAPHCFKSFLKKSEFEMHIQDVHADLLRPNVDKEDGNESETNSVRQSAMSDASARAPQRPVFSPGSNSQLPDREDKAGQQPPRDQPPSRPTLQPKPPSFGQVQNHSADLQSGSNGGIPQGFYQQSSDMQRPLQEPSQFPDRHRGVTPETPLPDYPPMHSSQTPNFAVPVNANPMLNPPVPFGYPPYPPHEGAPPFYVNPYDMRRQDSASEGGGDQSSLLGFPPGAAAGTNFPANYPQPLNAGAGGLPFEQGHSGMAMDPRDAKGMLAPHSMPLPPPPPPPLPPMSHLNQKYYSGEFGHNGHGYGWQHDNRETFGGQD 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1154g00014 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 432 IPR040383 GO:0016567|GO:0061630
Pral1154g00014 442 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Pral1154g00014 442 MobiDBLite consensus disorder prediction 315 442 - -
Pral1154g00014 442 MobiDBLite consensus disorder prediction 153 294 - -
Pral1154g00014 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Pral1154g00014 442 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Pral1154g00014 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Pral1154g00014 442 MobiDBLite consensus disorder prediction 185 199 - -
Pral1154g00014 442 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Pral1154g00014 442 MobiDBLite consensus disorder prediction 394 410 - -
Pral1154g00014 442 MobiDBLite consensus disorder prediction 220 258 - -
Pral1154g00014 442 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1154g00014 Pral-Chr1154 53850 57365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1154g00014 1 439 C2H2 Transcription Factor Family AT5G01160 45.516 3.07e-107 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1154g00014 K15685 - gmx:100817582 622.468