Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1154g00011 ATGGCGAGATACCGAAGCCGGAGCAGAAGCTACAGCCCTCGTCGGCGAAGCAGAACCCCGCCACGTGGACGCAAGCGGTACGACGATGAACCTCGTGATCGCTACCGTGAAAGCAGGTCCTACAGGGACCGCCGCTCTCCTGCTCCTTCAGGCTTGCTTGTCCGTAATCTTCCGCTCGATGCTGTGCCTGAAGATCTTAGAGGCCCCTTTGAGCGCTATGGCCCTGTGAAAGATGTATATCTTCCTAAGAATTACTACACTGGTGAGCCCCGGGGCTTTGGCTTTGTAAAGTTCCGGTATGCTGAAGATGCTGCTGAGGCAAAGCAACAACTTAATCATACTGTTATTGGTGGACGTGAGATCAGAATTGTGTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTTCGAATGTTCGCATAAGTGGTCGATATGGAGGAAATGGTAGAAGGAGAACTCCCACAAGATCCCGCCGATATCGTTCCTACTCAAGGTCTCTATCGCCAGCTGGGGATCACCCAAGGGATCATAGGGATAAGGACGATTATTATTCCCCTGAGCGATCAAGATCTTATTCCAGGTCTCCTTCGCCTCGTGGAAGGAAGGATTACAGGAGGTCCCCAACTCCAAGGGAGAATGGTCGGAGTCCTGATGACAGGAGGGATCATACACGTAGTAGATCAGAGAGTCCCAGGGGTAATGGTCGCAGTCCCTCAAGGTCTCGTTCACGGTCATACAGTCCCCGTTGA 753 0.5179 MARYRSRSRSYSPRRRSRTPPRGRKRYDDEPRDRYRESRSYRDRRSPAPSGLLVRNLPLDAVPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRSNVRISGRYGGNGRRRTPTRSRRYRSYSRSLSPAGDHPRDHRDKDDYYSPERSRSYSRSPSPRGRKDYRRSPTPRENGRSPDDRRDHTRSRSESPRGNGRSPSRSRSRSYSPR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1154g00011 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Pral1154g00011 250 MobiDBLite consensus disorder prediction 1 52 - -
Pral1154g00011 250 MobiDBLite consensus disorder prediction 22 44 - -
Pral1154g00011 250 SUPERFAMILY RNA-binding domain, RBD 48 154 IPR035979 GO:0003676
Pral1154g00011 250 MobiDBLite consensus disorder prediction 232 250 - -
Pral1154g00011 250 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Pral1154g00011 250 Gene3D - 2 140 IPR012677 -
Pral1154g00011 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Pral1154g00011 250 MobiDBLite consensus disorder prediction 130 250 - -
Pral1154g00011 250 MobiDBLite consensus disorder prediction 1 21 - -
Pral1154g00011 250 MobiDBLite consensus disorder prediction 171 231 - -
Pral1154g00011 250 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Pral1154g00011 250 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 46 241 - -
Pral1154g00011 250 SMART rrm2_1 51 124 IPR003954 GO:0003676
Pral1154g00011 250 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1154g00011 Pral-Chr1154 39793 44155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1154g00011 42 137 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 5.10e-07 48.5