Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral114g00008 ATGGCTTGGTCTAATGGTGGTGGTAACTTCTCGGCCCGGAAGGCGGTGCGCCCGACTCGGCCCAGCTATGTTCCTCCTGCCTTCAGGAACAATGGCATGCCTGGTTTCAACAATGTGGACTCATTCCTGCCGGCAAATGGCTCCGCTCAGTCTGGTTTGGCTTCCTTCAACTCTTACAGTTCCAGACAGCAAGCTAGGGGTGGTGTGAGTAACGGCCGTTTTGGTGCTCGCGGTCGTGGTGGTAGAGGCCGGAGGTTTGATCGACCGGAAGAGACTGATGAGGCGAACCATTACCCGAATCGAAACGGTTTTGGGGTTCGTGACACGCTCGACACTACAGAGAGTTTCGGAGAAGATGCCGATGTCTGTGGTGGTATCAATTTTGACGCATACGAAGATATTCCAGTGGAGGTCAGTGGTTCTGACGTACCTCCTCCGGTCAATACCTTCGCAGAAATAGAGTTGAACGAGGGTTTGAACAAGAATATCAAGCGATGCAAATACGTCAAACCCACTCCGATTCAGCGTCATGCGATTCCCATCGCCGTTGCTGGTCGCGACTTGATGGCTTGTGCTCAGACCGGCTCAGGGAAGACGGCGGCGTTCTGTTTCCCCATTATATCTGGAGTTTTGAAGGATCGTTCTAGGTTTTTCGCTGCGGCTCGGGAAGGCTGGATTGCTCATCCTACTGCGCTTATAATGTCACCAACTAGGGAGTTGTCATGTCAGATTCATGATGAGGCCACGAAGTTCGCTTATCAGACCGGAGTGAAGATTGTGGCTGCTTATGGTGGGGCACCGATTGCTCAGCAGTTTCGTAATTTGGAAAAAGGAGTGGACATCTTAGTTGCAACTCCTGGTCGCCTCGTTGACATGATTGAGAGAGGCAGGGTTTCACTTACGCAAATAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTGCTAGACAGACTATGCTCTTCAGTGCTACGTTCCCAGATGATATACAGAAGCTGGCGGCAGACTTTCTTTCAAACTACATATTCTTGGCAATTGGAAGAGTTGGTTCCAGCACTGAATTGATTGTACAAAAAGTTGAACTTGTTCAGGATATGGACAAAAGAGACCATCTGGTCGATCTTCTTCGTTCTCAAAGGGTAAATGGGTTCAATGGAAAGCAAGCTTTGACTCTAGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTGGAAAATTGGCTGTCGAGAAAAGGTTTCCCAGCTATTGCGATACATGGTGACAAAATTCAAATGGAGAGGGAAAGAGCCTTGAGATCTTTCAAAAGTGGTGCGACTCCTATTTTGGTTGCCACTGATGTTGCTTCAAGAGGTTTAGACATACCACATGTGGCTCATGTTGTCAATTTCGACTTGCCAAAAGATATAGATGGCTATGTTCACAGAATTGGCCGAACTGGGCGTGCCGGCAAGTCTGGTTTGGCCACTGCTTTCTTCAGTGACAAAAACATCCCTCTTGCAAAGGCCCTCACTGAACTCATGCAAGAAGCAAACCAAAAGGTTCCCTCTTGGCTCACCCGATATGCAGAGAGTTCTTCATGTGAAATCCGTGGCAGCAGAAGGGGCCAGTGGTATGATAATGGCAAATATGGCGGCCATGATTTTAGAAATATGACTCAACATGAAGCAGGGTACCACAACCACTACGTGGATGCAGGTTTTGCAGTGAACTCTGGCGCTATAACGACAGCTTACGACATCCCTGATCCTAACAATGATTCTTATGATACATCAAACACAGTTCCTCCAACTAGCAGCAATTACCATTACAGTGATGATGCCAGTGCTTACTATGGAAGCGGGAGAGCCGATGGGCCAAATGGGTACGTATCTGTTGTTCCTACTGGATGGGACTAG 1959 0.4809 MAWSNGGGNFSARKAVRPTRPSYVPPAFRNNGMPGFNNVDSFLPANGSAQSGLASFNSYSSRQQARGGVSNGRFGARGRGGRGRRFDRPEETDEANHYPNRNGFGVRDTLDTTESFGEDADVCGGINFDAYEDIPVEVSGSDVPPPVNTFAEIELNEGLNKNIKRCKYVKPTPIQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGVLKDRSRFFAAAREGWIAHPTALIMSPTRELSCQIHDEATKFAYQTGVKIVAAYGGAPIAQQFRNLEKGVDILVATPGRLVDMIERGRVSLTQIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPDDIQKLAADFLSNYIFLAIGRVGSSTELIVQKVELVQDMDKRDHLVDLLRSQRVNGFNGKQALTLVFVETKRGADALENWLSRKGFPAIAIHGDKIQMERERALRSFKSGATPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGKSGLATAFFSDKNIPLAKALTELMQEANQKVPSWLTRYAESSSCEIRGSRRGQWYDNGKYGGHDFRNMTQHEAGYHNHYVDAGFAVNSGAITTAYDIPDPNNDSYDTSNTVPPTSSNYHYSDDASAYYGSGRADGPNGYVSVVPTGWD 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral114g00008 652 FunFam Probable ATP-dependent RNA helicase DDX4 112 367 - -
Pral114g00008 652 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Pral114g00008 652 SMART helicmild6 423 504 IPR001650 -
Pral114g00008 652 CDD DEADc_DDX3_DDX4 149 371 IPR044763 GO:0003724|GO:0005524
Pral114g00008 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 522 IPR027417 -
Pral114g00008 652 FunFam ATP-dependent RNA helicase RhlB 368 547 - -
Pral114g00008 652 MobiDBLite consensus disorder prediction 1 21 - -
Pral114g00008 652 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 543 IPR001650 -
Pral114g00008 652 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 114 543 - -
Pral114g00008 652 MobiDBLite consensus disorder prediction 80 97 - -
Pral114g00008 652 Pfam Helicase conserved C-terminal domain 389 504 IPR001650 -
Pral114g00008 652 Gene3D - 368 547 IPR027417 -
Pral114g00008 652 CDD SF2_C_DEAD 377 513 - -
Pral114g00008 652 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 365 IPR014001 -
Pral114g00008 652 Pfam DEAD/DEAH box helicase 172 354 IPR011545 GO:0003676|GO:0005524
Pral114g00008 652 MobiDBLite consensus disorder prediction 60 111 - -
Pral114g00008 652 Gene3D - 110 367 IPR027417 -
Pral114g00008 652 SMART ultradead3 167 380 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral114g00008 Pral-Chr114 95366 99099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral114g00008 130 536 Eukaryotic Initiation Factors Gene Family AT3G19760 31.373 4.43e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral114g00008 K11594 - qsa:O6P43_023075 795.038