Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1145g00001 ATGACTTCTGCTAAGAACGCCGCCCACGCTGTCGGCGGCAAGACCGCCCGAGCCTGCGACAACTGCATAAGGAAGCGCGCTCGCTGGTACTGTGCTGCCGACGATGCTTTCCTCTGCCAGTCCTGCGACTCTCTGGTTCACTCCGCCAATCCATTGGCTCGCCGCCATGAAAGGCTCCGCTTGAAGACTGCATCGTTTAAATCCTCATCCGCCTCCTCCGATGTGGTCGTTTTACCTACGGCGGATCTCACTCTGGCTCCGTCGTGGCACCGAGGCATCACCAAGAAAGCTCGTACGCCTCGACATGGAAAGAACCAATCTTCCGCTGCCCATCAAACACCCAGAAGGCGAGACGAACCGATCAGAAACCCGTTCCATCTTGTGCCGGAGGTGGGTTCCGATGAATATTCCAATTCTCACGACGAAAACGAAGAACAGCTTCTTTATCGGGTACCCATATTCGACCCGTTCGTCACGGAGCTACGTACTCCTCCATCGTCGGCGACTTCAGCTGAAGCAGCAACAGCGGCTACTCCCGGTCCAAACCATCAGACGGCCGACAACAATAAAGAGACGAAGCAGACAGAAAGCAAAGTCTCATCGGGAAACAAAAGCAATAATGGGGTGGACAATAATTTACACGGCTTTCTTCCATCTGAAATGGAACTTGCCCAGTTCGCGGCCGATGTGGAGAGTTTACTGGGCAGGGGATTAGAGAATGAATGTATAGGCATGGAGGATTTGGGGCTTATTGACAGCAAAGAGAAAGAATCGAGGGATTGTTCTGTAGGGTGTGAAAAAGTGAAGGTGGAAGATGAAGAGAGCCCGTGTAAGGTTGAAACGGACGAGATGGAAATCGGAATCAGAGAACCATTTGAATTGAACTTCGATTATGACTCTCCGGCAACACGTGAACAAGCGGATGACGAAGACGACGAGAAGAAGGTCGCTTTGGATATGGCGAATGAGATGAGAAACGATGGAGGAGAAGTCAAAGCAAATAGTAATCAGAGAAAGAGGAAGATATTATTGCAGTTGGACTACGAAGCAGTCATTTCTGCTTGGACATCCCAGAAATCTCCATGGACGACCGGTGGCAAACCAGACTTGGACGCCGACGAGTGTTGGCCTGAGTGCATGGGGGCGTGTGGAATGGAGCTTCATCAACCCTACTATGGAGAAATGGGGACATACGGGTGCCAAGCAGGGATGGGTGACGGAGGGAGAGAGGCTAGGGTGTCGAGGTACAGAGAAAAGAGGAGGACGAGGTTGTTCTCAAAGAAAATAAGGTACGAGGTTCGCAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGGAGGTTTGTGAAGAGGGCCTCTTTTGCAGTTGCAGCAGCAGCAGCACAGCCTTCTTCCTGCCCTTTCCTCAGCAAATAA 1416 0.5134 MTSAKNAAHAVGGKTARACDNCIRKRARWYCAADDAFLCQSCDSLVHSANPLARRHERLRLKTASFKSSSASSDVVVLPTADLTLAPSWHRGITKKARTPRHGKNQSSAAHQTPRRRDEPIRNPFHLVPEVGSDEYSNSHDENEEQLLYRVPIFDPFVTELRTPPSSATSAEAATAATPGPNHQTADNNKETKQTESKVSSGNKSNNGVDNNLHGFLPSEMELAQFAADVESLLGRGLENECIGMEDLGLIDSKEKESRDCSVGCEKVKVEDEESPCKVETDEMEIGIREPFELNFDYDSPATREQADDEDDEKKVALDMANEMRNDGGEVKANSNQRKRKILLQLDYEAVISAWTSQKSPWTTGGKPDLDADECWPECMGACGMELHQPYYGEMGTYGCQAGMGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVAAAAAQPSSCPFLSK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1145g00001 471 SMART bboxneu5 14 61 IPR000315 GO:0008270
Pral1145g00001 471 MobiDBLite consensus disorder prediction 89 142 - -
Pral1145g00001 471 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Pral1145g00001 471 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
Pral1145g00001 471 MobiDBLite consensus disorder prediction 162 188 - -
Pral1145g00001 471 ProSiteProfiles CCT domain profile. 409 451 IPR010402 GO:0005515
Pral1145g00001 471 CDD Bbox1_BBX-like 18 61 - -
Pral1145g00001 471 Pfam CCT motif 409 451 IPR010402 GO:0005515
Pral1145g00001 471 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 7 453 - -
Pral1145g00001 471 MobiDBLite consensus disorder prediction 195 210 - -
Pral1145g00001 471 MobiDBLite consensus disorder prediction 160 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1145g00001 Pral-Chr1145 11046 12885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1145g00001 5 451 C2C2-CO-like Transcription Factor Family AT1G25440 45.098 4.58e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral1145g00001 CCT 1.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1145g00001 - - pcin:129311419 700.279