Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1142g00001 ATGTCTCAGCTTTATTGTGGAGGTTGTCGGACATTGCTAATGTACACACGCGGAGCTCCTAGTGTGAGATGTTCTTGCTGTCAAACCGTAAACCTTGCGTCAGCCTCTAATCAACTCGCTCATATGCATTGTGGAAACTGCCGGACTACGCTCATGTATCCATTTGGTGCCCCATCAGTCAAATGTGCAGTTTGTCACTATATTACTAATGTCAGTATGAGCAATGGAAGGATTCCAATTCCTGTCCAGAGACCTAATGGAACAACCAACTCTGGAACATTGCCTTCTATTCCAACTAGCCAAACTGTCCTGGTTGAAAATCCTATGTCTGTTGATGCAAGTGGGAAACTGGTCAGCAATGTTGTTGTTGGCATTACAGCAGATAAGAAATAA 393 0.4377 MSQLYCGGCRTLLMYTRGAPSVRCSCCQTVNLASASNQLAHMHCGNCRTTLMYPFGAPSVKCAVCHYITNVSMSNGRIPIPVQRPNGTTNSGTLPSIPTSQTVLVENPMSVDASGKLVSNVVVGITADKK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1142g00001 130 NCBIfam zinc finger domain, LSD1 subclass 41 70 IPR005735 -
Pral1142g00001 130 NCBIfam zinc finger domain, LSD1 subclass 3 32 IPR005735 -
Pral1142g00001 130 PANTHER PROTEIN LSD1 1 129 IPR040319 -
Pral1142g00001 130 Pfam LSD1 zinc finger 6 30 IPR005735 -
Pral1142g00001 130 Pfam LSD1 zinc finger 44 68 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1142g00001 Pral-Chr1142 723 7628 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pral1142g00001 zf-LSD1 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1142g00001 - K12191 gmx:100776394 228.024