Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1141g00002 ATGGCGCACGTTACTCAACTCCCCTGCGATTGTGACGGTGTCTGTATGGTTTGCAAGGCGAAGCCTGCTGACGAAGAAAAACTGACGTGCAAAACCTGTGCTTCCCAATGGCATGTCAACTGTCTCTCTCAGCCACCGGAGACGATGGCGGAGACGCTTAAGTGGGAATGCCCAGATTGTTCTGTGCCGCCCTCAGATTTTCCTTCGGTTACCGTTGGCAAAGCCGTCCTTGACGGGGCCGGTGACTTGATGGCGGCGATCCGAGCGATTGAAGCGGATTCTTCTCTAACAGAGCTTGAGAAGGCGAAGAAACGACAGAAACTGATGAGTGGAAAGGCAGGTTCCGAGGAAGATGAAGGTAGTGTGAAGAAGGTAGAAGGTGAAAGGAAGGACGTTCTGGATATTCTCAGCGGGACTCTAAACTGCTCATTCTGTATGCAGTTACCCGAGAGGCCGGTCACGACTCCGTGTGGCCACAACTTCTGCCTAAAATGCTTTCAGAAGTGGATTGGACAAGGAAAACTAACATGTGCCAAGTGTCGTAGTGCTATCCCTTCCAAAATGGCTAGTCAACCGCGTATAAATTCTGCGCTTGTTATGGCTATCCGTATGGCAAAAGTATCCAAAAACATAGGTGCAGGAGAAACCTCTAGAGTTTATCAGTTTGTACATAACCAAGATAGACCAGACAAGGCTTATACTTCAGAGCGGGCCCAAAGGAAAGGCAAATCAAATGCTTGCAGTGGAAAGATTTTTGTAACTGTGCCTCAGGATCATTTTGGTCCAATCCCAGCTGAGAATGATCCAGTGAGGAATCAAGGTGTGCTGGTTGGTGAATGTTGGGAAGATAGACTTGATTGCCGGCAATGGGGTGCTCACTTCCCTCATGTTAGTGGTATTGCTGGACAATCAAACCATGGTGCACAATCAGTAGTTCTTTCTGGTGGTTATGTTGATGACGAGGATCATGGAGAGTATTTTCTCTATACTGGAAGTGGTGGTAGAGACTTAAGTGGAAACAAGCGAACAAGCAACGTACAATCATTTGATCAGAAGTTTGAAAAGTCCAATTTAGCTTTAAAAGTTAGCTGTTTGAAAGGTTATCCAGTTCGAGTTGTAAGATCTCACAAAGAGAAGAGATCCTCATATGCCCCTGAACAAGGATTACGTTATGATGGCGTTTACAGAATTGAAAAGTGTTGGCGGAAACAGGGGTTGCAGGGCTTCAAGGTTTGTCGGTACTTATTTGTTAGATGTGACAATGAGCCTGCCCCATGGACAAGTGATGATCATGGAGATCGTCCCCGACCATTGCCAGTAATTCCTGAGTTAGAAAAGGCTACAGACTTAGTTGTCAGGAAGGAGAATCCATCGTGGGATTTTGATGAGGAAGGATCTTGTTGGAAGTGGAAAAAACCACAACCTCCCAGTCAAAGGCATGTGAAAAGTATGGATCCCCAAGATGTAAAAAGGTCAAGGAGGGAAATAAGGAAAGCACAAAATCTTTCAATCAGGGAAAGATTGCTGAAAGGATTTGGTTGCCTTATCTGTAAAGAGGTTATGGTTACTCCTGTGACGACGCCCTGTGCTCATAATTTCTGCAAGCCATGTTTGGAAGGTGCGTTTGTAGGTCAATCTTTTGTGAGAGAAAGAAGCAGGGGTGGAAGATCTCTGCGGTCCCAAAAGAACGTGATGAAATGCCCTTCTTGCCCTACTGACATTTCTGATTTTCTTCAGAACGTTCAGGTCAATACAGAGTTGTTGGGTTTAATTGAATCATTGAAAGCTGAGGCTGAAGAAAATAAAGATGAAAGCGAGGATGAAGATGGAGCCGAGGCAGACTGTGATGATGCAGTGGCCACAATGGATGAAGATAAGGATACTTCGGTTGAAGAACCCAATGATTCACCTGAGGAATCTGATGCTAGCAAACTAAAGTCAAAAGAACCTGGAGTGACCACTCGTGCAGCCAAGGATAATTGCAAAAGAAAGAGAGCCAATGCTGAAGAAATTTCTCCCAAAGGTGGCAAAAGTAAAAAGGCTGAGAGTGATGGAAATGATTCACCAGCAAGTCCTCTTCATTTGCCATCAGACAGTTAG 2100 0.4533 MAHVTQLPCDCDGVCMVCKAKPADEEKLTCKTCASQWHVNCLSQPPETMAETLKWECPDCSVPPSDFPSVTVGKAVLDGAGDLMAAIRAIEADSSLTELEKAKKRQKLMSGKAGSEEDEGSVKKVEGERKDVLDILSGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKLTCAKCRSAIPSKMASQPRINSALVMAIRMAKVSKNIGAGETSRVYQFVHNQDRPDKAYTSERAQRKGKSNACSGKIFVTVPQDHFGPIPAENDPVRNQGVLVGECWEDRLDCRQWGAHFPHVSGIAGQSNHGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNKRTSNVQSFDQKFEKSNLALKVSCLKGYPVRVVRSHKEKRSSYAPEQGLRYDGVYRIEKCWRKQGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVIPELEKATDLVVRKENPSWDFDEEGSCWKWKKPQPPSQRHVKSMDPQDVKRSRREIRKAQNLSIRERLLKGFGCLICKEVMVTPVTTPCAHNFCKPCLEGAFVGQSFVRERSRGGRSLRSQKNVMKCPSCPTDISDFLQNVQVNTELLGLIESLKAEAEENKDESEDEDGAEADCDDAVATMDEDKDTSVEEPNDSPEESDASKLKSKEPGVTTRAAKDNCKRKRANAEEISPKGGKSKKAESDGNDSPASPLHLPSDS 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1141g00002 699 SUPERFAMILY RING/U-box 134 198 - -
Pral1141g00002 699 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Pral1141g00002 699 Coils Coil 584 611 - -
Pral1141g00002 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 208 IPR013083 -
Pral1141g00002 699 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Pral1141g00002 699 SUPERFAMILY RING/U-box 508 596 - -
Pral1141g00002 699 Gene3D - 241 438 IPR036987 -
Pral1141g00002 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Pral1141g00002 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 617 IPR045134 -
Pral1141g00002 699 CDD RING-HC_ORTHRUS_rpt1 140 185 IPR047498 -
Pral1141g00002 699 SUPERFAMILY PUA domain-like 244 441 IPR015947 -
Pral1141g00002 699 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Pral1141g00002 699 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Pral1141g00002 699 MobiDBLite consensus disorder prediction 637 684 - -
Pral1141g00002 699 Pfam RING-type zinc-finger 514 568 IPR027370 -
Pral1141g00002 699 MobiDBLite consensus disorder prediction 470 490 - -
Pral1141g00002 699 MobiDBLite consensus disorder prediction 601 621 - -
Pral1141g00002 699 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Pral1141g00002 699 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Pral1141g00002 699 Pfam SAD/SRA domain 272 421 IPR003105 -
Pral1141g00002 699 MobiDBLite consensus disorder prediction 597 699 - -
Pral1141g00002 699 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Pral1141g00002 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 622 IPR013083 -
Pral1141g00002 699 SMART ring_2 15 60 IPR001841 -
Pral1141g00002 699 SMART ring_2 514 570 IPR001841 -
Pral1141g00002 699 SMART ring_2 142 180 IPR001841 -
Pral1141g00002 699 SMART PHD_3 14 61 IPR001965 -
Pral1141g00002 699 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 89 209 - -
Pral1141g00002 699 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Pral1141g00002 699 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 241 436 - -
Pral1141g00002 699 SMART G9a_1 265 422 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1141g00002 Pral-Chr1141 34833 39345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1141g00002 1 600 C2H2 Transcription Factor Family AT5G39550 62.706 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1141g00002 K10638 - qsa:O6P43_017375 1000.35