Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1138g00003 ATGGATAAGGGCAAGGACACGGAGGGCGGCGGCGGCGTCCGGTACCGGGGAGTGAGGAGGCGGCCATGGGGGAAGTTCGCGGCGGAGATCCGGGACTCGACGAACCAAGGGCAGAGGGTGTGGCTGGGGACTTTCGACACGGCGGAGGAAGCAGCCAGGGCATATGACAGAGCTGCTTATAACATGAGAGGCTCATTCGCTGTTATCAACTTCCCAAATGAGTATCCTCTCACAGCTGGTCGTTCTTCTAACACAGCAACTTCTTCTTCATCAGCAGCTCCTTCTTCTTCTTCTTCTTCATCTTCGAGGAGCCGCCATGAAGTGTTCGAGTTCGAGTACCTGGATGATAAGCTGCTGGAGGAGCTTCTGGACTGTGAGGAGAAAAAGAATTACAAGGGAAAGTGA 405 0.5457 MDKGKDTEGGGGVRYRGVRRRPWGKFAAEIRDSTNQGQRVWLGTFDTAEEAARAYDRAAYNMRGSFAVINFPNEYPLTAGRSSNTATSSSSAAPSSSSSSSSRSRHEVFEFEYLDDKLLEELLDCEEKKNYKGK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1138g00003 134 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Pral1138g00003 134 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Pral1138g00003 134 PANTHER DNA-BINDING DOMAIN 14 129 IPR044808 GO:0003700|GO:0009873
Pral1138g00003 134 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Pral1138g00003 134 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Pral1138g00003 134 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Pral1138g00003 134 MobiDBLite consensus disorder prediction 77 106 - -
Pral1138g00003 134 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Pral1138g00003 134 Pfam AP2 domain 14 64 IPR001471 GO:0003700|GO:0006355
Pral1138g00003 134 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Pral1138g00003 134 MobiDBLite consensus disorder prediction 77 104 - -
Pral1138g00003 134 CDD AP2 22 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1138g00003 Pral-Chr1138 32546 32950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1138g00003 14 129 AP2-EREBP Transcription Factor Family AT3G23230 64.167 2.29e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral1138g00003 AP2 3.2e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1138g00003 - - pcin:129299756 160.229