Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1134g00002 ATGGGGAAAGCAAAGATTGCGATAAAGAGGATAGACGATTCAGCAAACAGGCAAGTGACTTTCTCAAAGAGAAGAACTGGGTTGCTCAAGAAAGCAAGAGAGCTTGGGATCCTCTGTGACGCACAAGTTGGGGTCATCTTCTTCTCCAGCACCGGCAAGCTCTATGAATATGGAAGCTCCAGCTTGAAGTCAATTATTGACCGCTACAATAAACACAAAGATGAGGAACAACATCCGCTTATGAATCCAGCTTCAGAAGCCAAGTTTTGGCGGAGAGAAGCAACAGTCTTAAGGCAACAACTACAACACTTGCAGGAACTGCACAGGCAATTCACGGGTGAACAACTCTCTGGTCTGGGAATCAACGAATTAAAAAGTTTGGAAAATCAACTGGAGATGAGTTTGAAAAAGGTCCAGATCAAGAAGGAGCAAATTTTAGCTGATGAGATTAAAGAGTTACAACACAAGGGACATCAAATTCGCCAAGAAAATGTACAACTCTACAAAACAATGGAAGTCATTAGTAAAGAAAATGCAGAATTACAGACGAAGCTGAGCCAATCACAGTCTCAATCTAGTGAATCACCAACCAAAGCAATGGAGCTGGGATTACAGCTGCCTTAG 624 0.4247 MGKAKIAIKRIDDSANRQVTFSKRRTGLLKKARELGILCDAQVGVIFFSSTGKLYEYGSSSLKSIIDRYNKHKDEEQHPLMNPASEAKFWRREATVLRQQLQHLQELHRQFTGEQLSGLGINELKSLENQLEMSLKKVQIKKEQILADEIKELQHKGHQIRQENVQLYKTMEVISKENAELQTKLSQSQSQSSESPTKAMELGLQLP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1134g00002 207 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral1134g00002 207 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pral1134g00002 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 184 - -
Pral1134g00002 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1134g00002 207 MobiDBLite consensus disorder prediction 179 199 - -
Pral1134g00002 207 Coils Coil 121 144 - -
Pral1134g00002 207 Coils Coil 171 191 - -
Pral1134g00002 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1134g00002 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1134g00002 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1134g00002 207 Coils Coil 87 107 - -
Pral1134g00002 207 MobiDBLite consensus disorder prediction 179 207 - -
Pral1134g00002 207 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1134g00002 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1134g00002 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1134g00002 207 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1134g00002 207 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1134g00002 Pral-Chr1134 24440 28569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1134g00002 1 201 MADS-box Gene Family AT4G37940 53.953 2.10e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1134g00002 K-box 3.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1134g00002 K09264 - gmx:100808145 250.366