Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1134g00001 ATGGGGAAAGCCAAGATTGCGATTGAGAGGATTGACAATTCAACCAACAGACAAGTCACTTTCTCAAAGAGACGAAGTGGTCTGTTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAGGTTGGTGTTATTGTGTTCTCCAGCACCCACAAGCTCTATGAATATGGAAGCTCCAGCCTGAAGTCAATTATTGAGCGATACACTAAGCAAATAGAGGAACATCATCATCCACTCATGAATTCCGACTCAGAAGCCAAGTTTTGGCGGAGAGAAGCAACGGTCTTGAAGCAACAACTGCAACACTTGCAGGAATTGCACAGGTACAAAAGGTTAATCTCACAGGAAAGTGCTATGAACAAAGCAGTGCAACACAATGGAAGGCAATTCATGGGTGAACAGATTTCTGGTCTGGGAATCATCGAGTTGAAAACTTTGGAAAATCAACTGGAGATGAGTTTAAAAAATGTCCAGATCAAGAAGGAGCAAATTTTAGCTGACAAGATTAAAGAGTTACAACACAAGGTAAGACGAAGAAGTTTGCCTTCAATTACACAGCAATCAAGGAGGGAAGATGAAGACATCATCTCTAGTGAGCCTATTTCTGAAGCAAGGGTTGTGAATGAGGAATACGGGAATCCTAATAATCCTACATGCACTATTCATCTCCAGCTGAGCCAACCACAGTCTCAATCTAGTGAATCACCAACCAAAGCAATGGAGCTGGGATTACAGCTGCTTTGGCACAACCTCTTTGACAATCTAGGATTCTCAACGCCATGCTGCCACCAACTTTCCT 802 0.4314 MGKAKIAIERIDNSTNRQVTFSKRRSGLFKKARELAILCDAQVGVIVFSSTHKLYEYGSSSLKSIIERYTKQIEEHHHPLMNSDSEAKFWRREATVLKQQLQHLQELHRYKRLISQESAMNKAVQHNGRQFMGEQISGLGIIELKTLENQLEMSLKNVQIKKEQILADKIKELQHKVRRRSLPSITQQSRREDEDIISSEPISEARVVNEEYGNPNNPTCTIHLQLSQPQSQSSESPTKAMELGLQLLWHNLFDNLGFSTPCCHQLS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1134g00001 267 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1134g00001 267 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1134g00001 267 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1134g00001 267 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1134g00001 267 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1134g00001 267 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral1134g00001 267 ProSiteProfiles K-box domain profile. 87 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1134g00001 267 Coils Coil 144 164 - -
Pral1134g00001 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1134g00001 267 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral1134g00001 267 Coils Coil 87 107 - -
Pral1134g00001 267 Pfam K-box region 119 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1134g00001 267 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral1134g00001 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 223 - -
Pral1134g00001 267 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1134g00001 Pral-Chr1134 3930 7669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1134g00001 1 242 MADS-box Gene Family AT4G37940 44.082 1.19e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1134g00001 K-box 8.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1134g00001 K09264 - tcc:18608170 218.009