Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1132g00020 ATGTCCCCTGCCTACCCGCCCATCTCCTCCACCGGCACCAGCCTCGGATACGGCATCGCCATCGCGGTTAGCATTCTCGTCCTCATTTCTACCATCATGCTTGCTTCTTATGCTTGTGTTCGGATGAAGGCCAACGGCCGCAGCCATAACCGTCGTATCAGTAGTAATAGCAGTGGTAATAATATTTCGGATGAGCCGGTGGTGGTGGTTTTGGGTTTGGATAAGCCCACGATTGAAGGTTACCCAAAGATTGTGCTTGGGGAGAGTCGGAGATTACCGAGGCCCAATGGGGGCCCATGCGCTATTTGCTTGGGAGAGTACGTGAAGAATGATACGGTGCGGTGTGTTCCAGAGTGCAACCACTGCTTCCATGTGGGCTGCTTGGATGAGTGGCTTCGTCTGAGCGCCACGTGTCCCCTGTGTCGGAGCTCTCCTGCTCCATCGCCGGTGCCGACGCCGGTGGCCACTCCTCTGTCAGAATTGGTTCCACTTGCTTCCCACGCCAGGTGA 510 0.5608 MSPAYPPISSTGTSLGYGIAIAVSILVLISTIMLASYACVRMKANGRSHNRRISSNSSGNNISDEPVVVVLGLDKPTIEGYPKIVLGESRRLPRPNGGPCAICLGEYVKNDTVRCVPECNHCFHVGCLDEWLRLSATCPLCRSSPAPSPVPTPVATPLSELVPLASHAR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1132g00020 169 CDD RING-H2_EL5-like 100 142 - -
Pral1132g00020 169 Pfam Ring finger domain 100 142 IPR001841 -
Pral1132g00020 169 PANTHER RING-H2 FINGER PROTEIN ATL67 11 168 IPR044289 GO:0016567|GO:0016740
Pral1132g00020 169 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Pral1132g00020 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 147 IPR013083 -
Pral1132g00020 169 SUPERFAMILY RING/U-box 99 148 - -
Pral1132g00020 169 SMART ring_2 100 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1132g00020 Pral-Chr1132 174011 174520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1132g00020 1 169 C3H Transcription Factor Family AT5G07040 61.047 7.21e-66 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1132g00020 - - cave:132167250 228.024