Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1131g00019 ATGGGAAAAAGGAAGATTGCGATTGAGAGGATCGATGATATACCAAACAGGCAAGTTACTTTCTCAAAGAGACGAAGTGGTTTGTTCAAGAAGGCAAGGGAGCTTGCGATCCTCTGTGACTCACAAGTTGGGGTCATCGTGTTCTCTAGCACTGACAAGCTCTATGAATATGGTAGCCCCAGCAGCATGAAGTCAGTTATTGAGCGCTACAACAAAAAAAGAGAGGAAAATCATTTGCTTATGAATCCAGCTATAGAAGCCAAGTTTTGGCAAAGAGAGGCAACGGTCTTGAGGCAAGAACTTCAACAGTTGCAGGAATTGCACAGGCAATTGACGGGTGAACAACTTTCTGGTTTGGGCATTAACGAAGTGAACAATTTGGAAAATCAACTGGAGATGAGTTTAAAACGTGTCCAGATCAGAAAGGATCAAATTTTAACTGATGAGATTAAAGAGCTACAACAAAAGGGAAATCAAATTAGTCAGGAAAATGTTGAATTTTATCAAAGGATACAAGTCATTAGTAAAGAAAATGAAGAGTTAAGAAAGATCTGTCGATCAAGGGTTATTAATGAAGAAAATGAGAGTTTCAATCCTCCATACACTACCAATCTGCAGCTGAGCCAGCCACAACCTCAATCTAGTAAGCCACCAACCAAAGGAATAGAACTGGGGTATATTACTCCTTCAAACTCGTGA 699 0.4006 MGKRKIAIERIDDIPNRQVTFSKRRSGLFKKARELAILCDSQVGVIVFSSTDKLYEYGSPSSMKSVIERYNKKREENHLLMNPAIEAKFWQREATVLRQELQQLQELHRQLTGEQLSGLGINEVNNLENQLEMSLKRVQIRKDQILTDEIKELQQKGNQISQENVEFYQRIQVISKENEELRKICRSRVINEENESFNPPYTTNLQLSQPQPQSSKPPTKGIELGYITPSNS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1131g00019 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1131g00019 232 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00019 232 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pral1131g00019 232 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00019 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1131g00019 232 MobiDBLite consensus disorder prediction 194 218 - -
Pral1131g00019 232 Coils Coil 87 114 - -
Pral1131g00019 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1131g00019 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 - -
Pral1131g00019 232 Gene3D - 15 84 IPR036879 GO:0003677|GO:0046983
Pral1131g00019 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1131g00019 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1131g00019 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1131g00019 232 MobiDBLite consensus disorder prediction 194 232 - -
Pral1131g00019 232 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1131g00019 Pral-Chr1131 206879 213053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1131g00019 1 223 MADS-box Gene Family AT4G37940 52.018 1.12e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1131g00019 K-box 7.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1131g00019 K09264 - gmx:100808145 266.544