Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1131g00017 ATGGGGAAAGCCAAGATTGCGATTGAGAGGATTGACAATTCAACCAACAGACAAGTCACTTTCTCAAAGAGACGAAGTGGTCTGTTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAAGTTGGGGTTATTGTGTTCTCCAGCACCCACAAGCTCTATGAATATGGAAGCTCCAGCCTGAAGTCAATTATTGAGCGCTACAATAAACGAATAGAGGAACATCATCATCCGCTCATGAATGCTGACTCAGAAGCCAAGTTTTGGCAAAGAGAAGCAACGGTCCTGAGGCAAGAACTTCAACAATTGCAGGAATTGCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTAGGCATTAATGAAGTGAAGAATTTGGAAAATCAACTGGAGATGAGTTTAAAACGTGTGCAGATCAAAAGGGATCAAATCTTAATTGATGAGATTAAAGAGCTACAGCAAAAGGGAAATCAAATTAGTCAAGAAAATGTTGAACTCTATCAAAGGATACAAGTTATTACTAAAGAAAATGCGGAGTTAAAAAAGATAGATTTATGA 561 0.3957 MGKAKIAIERIDNSTNRQVTFSKRRSGLFKKARELAILCDAQVGVIVFSSTHKLYEYGSSSLKSIIERYNKRIEEHHHPLMNADSEAKFWQREATVLRQELQQLQELHRQLMGEQLSGLGINEVKNLENQLEMSLKRVQIKRDQILIDEIKELQQKGNQISQENVELYQRIQVITKENAELKKIDL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1131g00017 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1131g00017 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1131g00017 186 Coils Coil 80 114 - -
Pral1131g00017 186 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pral1131g00017 186 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00017 186 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00017 186 Coils Coil 121 144 - -
Pral1131g00017 186 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral1131g00017 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1131g00017 186 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral1131g00017 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1131g00017 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1131g00017 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1131g00017 186 Coils Coil 150 170 - -
Pral1131g00017 186 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral1131g00017 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1131g00017 Pral-Chr1131 159608 163899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1131g00017 1 183 MADS-box Gene Family AT2G22630 59.239 4.97e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1131g00017 K-box 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1131g00017 K09264 - gmx:100808145 253.832