Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1131g00016 ATGGGGAAAGCCAAGATTGCGATTGAGAGGATTGACAATTCAACCAACAGACAAGTCACTTTCTCAAAGAGACGAAGTGGTCTGTTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAAGTTGGGGTTATTGTGTTCTCCAGCACCCACAAGCTCTATGAATATGGAAGCTCCAGCCTGAAGTCAATTATTGAGCGCTACAATAAACGAATAGAGGAACATCATCATCCGCTCATGAATGCTGACTCAGAAGCCAAGTTTTGGCAAAGAGAAGCAACGGTCCTGAGGCAAGAACTTCAACAATTGCAGGAATTGCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTAGGCATTAATGAAGTGAAGAATTTGGAAAATCAACTGGAGATGAGTTTAAAACGTGTGCAGATCAAAAGGGATCAAATCTTAATTGATGAGATTAAAGAGCTACAGCAAAAGGGAAATCAAATTAGTCAAGAAAATGTTGAACTCTATCAAAGGATACAAGTTATTACTAAAGAAAATGCGGAGTTAAAAAAGATTTATGAAGCAAGGGTTATGAATGAAGAAAATGAGAGATTCAATCTGCAGCTGAGCCAGCCAGAATCTCAATCTAGTGAGCCACTCACCAAAGCAATGGAACAGGGGTATATTATATTCCTTCAAACTGCCGAATAA 687 0.4003 MGKAKIAIERIDNSTNRQVTFSKRRSGLFKKARELAILCDAQVGVIVFSSTHKLYEYGSSSLKSIIERYNKRIEEHHHPLMNADSEAKFWQREATVLRQELQQLQELHRQLMGEQLSGLGINEVKNLENQLEMSLKRVQIKRDQILIDEIKELQQKGNQISQENVELYQRIQVITKENAELKKIYEARVMNEENERFNLQLSQPESQSSEPLTKAMEQGYIIFLQTAE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1131g00016 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1131g00016 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1131g00016 228 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pral1131g00016 228 Coils Coil 80 114 - -
Pral1131g00016 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1131g00016 228 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00016 228 Coils Coil 121 144 - -
Pral1131g00016 228 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral1131g00016 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1131g00016 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1131g00016 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1131g00016 228 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00016 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral1131g00016 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 193 - -
Pral1131g00016 228 Coils Coil 150 170 - -
Pral1131g00016 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1131g00016 Pral-Chr1131 159218 163899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1131g00016 1 217 MADS-box Gene Family AT4G37940 52.752 4.97e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1131g00016 K-box 4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1131g00016 K09264 - gmx:100808145 277.715