Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1131g00015 ATGGGGAGAGGGAAGATTGCGATAAAGAGGATTGACAATTTAACAAACAGGCAAGTCACTTTCTCAAAGAGACGAAGTGGTCTGCTCAAGAAAGCCAAGGAGCTTGCCATCCTCTGTGACGCTCAAGTTGGGGTCATCGTCTTCTCCAGCACCGGCAAGCTCCATGAATATGGAAGCTCCAGTCTTAAGTCAATTATTGACCGCCACAATAAACACAAAGAGGAACAGCATCCACTTATGAATCCAGCTTCGGAAGCCAAGTTTTGGCAAAGAGAAGCAACAGTCTTGAGGCAACAACTTCAACATTTGCAGGAGTTGCAGAGGCAATTGATGGGTGAACAAGTTTCTGGTTTGAGCATTAACGAAGTGAACAATTTGGAAAATCAACTGAAGATGAGTTTAAAACGTGTCCAGACCAAAAAGGATCAAATATTAACTGATGAGATTAAAGAGCGACGACAAAAGGGAAATCAAATTAGTCAAGAAAATGTTGAACTCTGTCAAAGGATACAAGTAATCAAGAAGGAAAATGCACAGTTAAAAAAGATTTGTGAGGAAAGAGCTATGAATGACGACAATGAGAGTTTCAAAGCACCATACACTAGCAACCTGCAGTTGAGCCAGCAGCCGCAATCTGATGAAGCTAGTGAGCCACCAACCAAAGCAATGGAACTGGGGATTTTCAGACACCGTTTGCTACCGACAACTTTCCTGTGGGAAGATCAACTTTTTTTCTATGGGGAAGAGATAGGTATGTTTCAATTCAAAAAGATAGTTAGTTAG 783 0.4163 MGRGKIAIKRIDNLTNRQVTFSKRRSGLLKKAKELAILCDAQVGVIVFSSTGKLHEYGSSSLKSIIDRHNKHKEEQHPLMNPASEAKFWQREATVLRQQLQHLQELQRQLMGEQVSGLSINEVNNLENQLKMSLKRVQTKKDQILTDEIKERRQKGNQISQENVELCQRIQVIKKENAQLKKICEERAMNDDNESFKAPYTSNLQLSQQPQSDEASEPPTKAMELGIFRHRLLPTTFLWEDQLFFYGEEIGMFQFKKIVS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1131g00015 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1131g00015 260 ProSiteProfiles K-box domain profile. 86 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00015 260 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00015 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1131g00015 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1131g00015 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1131g00015 260 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pral1131g00015 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1131g00015 260 Coils Coil 123 143 - -
Pral1131g00015 260 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pral1131g00015 260 Coils Coil 86 106 - -
Pral1131g00015 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1131g00015 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 199 - -
Pral1131g00015 260 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral1131g00015 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1131g00015 Pral-Chr1131 122504 128219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1131g00015 1 219 MADS-box Gene Family AT4G37940 53.275 3.09e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1131g00015 K-box 4.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1131g00015 K09264 - gmx:100805092 276.174