Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1131g00014 ATGGGGAAAGCAAAGATTGCGATAAAGAGGATAGACGATTCAGCAAACAGGCAAGTGACTTTCTCAAAGAGAAGAACTGGGTTGCTCAAGAAAGCAAGAGAGCTTGGGATCCTCTGTGACGCACAAGTTGGGGTCATCTTCTTCTCCAGCACCGGCAAGCTCTATGAATATGGAAGCTCCAGCTTGAAGTCAATTATTGACCGCTACAATAAACACAAAGATGAGGAACAACATCCGCTTATGAATCCAGCTTCAGAAGCCAAGTTTTGGCAAAGAGAAGCAACAGTCTTGAGGCAACAACTTCAACATTTGCAGGAGTTGCAGAGGCAATTGATGGGTGAACAAGTTTCTGGTTTGAGCATTAACGAAGTGAACAATTTGGAAAATCAACTGAAGATGAGTTTAAAACGTGTCCAGACCAAAAAGGATCAAATATTAACTGATGAGATTAAAGAGCGACGACAAAAGGGAAATCAAATTAGTCAAGAAAATGTTGAACTCTGTCAAAGGATACAAGTAATCAAGAAGGAAAATGCACAGTTAAAAAAGATTTGTGAGGAAAGAGCTATGAATGACGACAATGAGAGTTTCAAAGCACCATACACTAGCAACCTGCAGTTGAGCCAGCAGCCGCAATCTGATGAAGCTAGTGAGCCACCAACCAAAGCAATGGAACTGGGGATTTTCAGACACCGTTTGCTACCGACAACTTTCCTGTGGGAAGATCAACTTTTTTTCTATGGGGAAGAGATAGGTATGTTTCAATTCAAAAAGATAGTTAGTTAG 786 0.4109 MGKAKIAIKRIDDSANRQVTFSKRRTGLLKKARELGILCDAQVGVIFFSSTGKLYEYGSSSLKSIIDRYNKHKDEEQHPLMNPASEAKFWQREATVLRQQLQHLQELQRQLMGEQVSGLSINEVNNLENQLKMSLKRVQTKKDQILTDEIKERRQKGNQISQENVELCQRIQVIKKENAQLKKICEERAMNDDNESFKAPYTSNLQLSQQPQSDEASEPPTKAMELGIFRHRLLPTTFLWEDQLFFYGEEIGMFQFKKIVS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1131g00014 261 Coils Coil 87 107 - -
Pral1131g00014 261 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pral1131g00014 261 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1131g00014 261 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Pral1131g00014 261 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00014 261 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1131g00014 261 Coils Coil 124 144 - -
Pral1131g00014 261 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1131g00014 261 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1131g00014 261 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1131g00014 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1131g00014 261 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pral1131g00014 261 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1131g00014 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1131g00014 Pral-Chr1131 122504 190184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1131g00014 1 220 MADS-box Gene Family AT4G37940 52.609 6.48e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1131g00014 K-box 3.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1131g00014 K09264 - gmx:100805092 268.855