Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1123g00005 ATGGGAACTGATCGTGGTGAAGTAGTGGAGCCACTACCAAATGTCCGCTCCTTTAAGGTCCATCGAAAAATGTGCATAGAGCTAATGAAATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGCTCATCAGGAATACAATCTCTGTGCTTGCTAAACAGTGCAGTTGACAAAGCCAAACTTCTCCTGCAGCATTGCTGCGAGTCTAGCAAACTCTACCTGGCGGTGACGGGAGATACTGTGCTCTCAAGATTCCTAAAGGCAAGAAAATCATTGGAGCAAAGCTTAGGTCAAGTTCAGAGCATTGTTCCAGTTATGTTGGCTGCGGAGATTTCTCAAATAATTGATAATCTTGCATGCATGACTATTGTACTGGATTCAGCTGAAGAAGAGGCTGGGAGGGTTGTAAAGGAATTACTTCAGCAAGGTGCTTCAACCGCAGACTCTGTTGAAAATTCTGAGATTAAAGCTCTTCAGTTTGCGGCCGCAAGACTTAATATCTCATCCCCGAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGTTAGATAAAGTTGGGCCAAATGATCAGACAAAAAAGACGATCTTGAGATATCTCTTGTATCTGTTGAAGAAGTATGGAAAGTATATCACAGGAGAACAGATGGAAATGATCTATCCTTATAGTGAAGGATCGATTGTACCTGAGAACTGCAGTCATCATTCTCGACATATCCATAATATTGAATCAGAAAGATGCCTTAATCATGATCAGTATGAAACTCGCAACAGTGAGATGGGTAGAGTAGAACCGCCCGAGGAATACAAATGTCCAATATCTTCAAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGACGAGGGCAATGATACATGTCCAAAAACCGAGAAGAGACTGGCCCATATGTCATTGACTCCAAACACTGTTATGAAGGACTTAATATCCAAGTGGTGCAGAAATAATGGAGTTATACTTGCTGAACCACAACAGCAAGCAAAAGAATTTCACTCATGGGAGGTTTCTTCAATTTCCATTAGGAGTTTTGGCAGTTCCATGGATGATCTGCACTTACCAGTAGATCTTAGCAACATGTCACTTGGATCATTAGATTATAGTCAAGGTTCTGATTCCTCACATGCTCGGAACTCTAACGACTTAAATTTGATGTCGAAGAAGGTCAATGACAATTCTTGGAGTCATCAACTTAATGTGCATGTGCATGACACTGATCTGATAATTTTGTCTGAATCCCATGGCCTTGAATGGGATTCTCAATGCCAGGCCATTGAAGATCTGAAAGATCGTTTGAAATGCAATTGCCAAAGTTCTTGTTCTGTGTCTTCTGAACGTTTTATTGAATTTCTCAACAGATTTTTGAGCAGTGCATATGAACGTCAAGATGTGAAAGCTCTTAGAACTGGAACTCAGTTGTTAATGGAATTTGTGAATAACTGCGGAAAGGATCTATCTTATTTAAGAGAAGGTACATTTGGCATGTTGGGAAGTTTCCTTGATTTAGAAGTGATAGGTGAAGCTCTTTCTATAATGGAAAAACTATCTGCAAGTCAGCACAGCAAAGCTACAAGTGCAACGTCCAGTGTGCTCACTTCCATCTTAAAGATCCTGGACTCTGACAGCAGAGGGTTCCAAGAACAA 1722 0.4042 MGTDRGEVVEPLPNVRSFKVHRKMCIELMKLVDRISRIFPDIEAARPRCSSGIQSLCLLNSAVDKAKLLLQHCCESSKLYLAVTGDTVLSRFLKARKSLEQSLGQVQSIVPVMLAAEISQIIDNLACMTIVLDSAEEEAGRVVKELLQQGASTADSVENSEIKALQFAAARLNISSPKAILIEKRSIKKLLDKVGPNDQTKKTILRYLLYLLKKYGKYITGEQMEMIYPYSEGSIVPENCSHHSRHIHNIESERCLNHDQYETRNSEMGRVEPPEEYKCPISSRLMYDPVVIASGATYERMWIQKWFDEGNDTCPKTEKRLAHMSLTPNTVMKDLISKWCRNNGVILAEPQQQAKEFHSWEVSSISIRSFGSSMDDLHLPVDLSNMSLGSLDYSQGSDSSHARNSNDLNLMSKKVNDNSWSHQLNVHVHDTDLIILSESHGLEWDSQCQAIEDLKDRLKCNCQSSCSVSSERFIEFLNRFLSSAYERQDVKALRTGTQLLMEFVNNCGKDLSYLREGTFGMLGSFLDLEVIGEALSIMEKLSASQHSKATSATSSVLTSILKILDSDSRGFQEQ 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1123g00005 574 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Pral1123g00005 574 FunFam RING-type E3 ubiquitin transferase 272 346 - -
Pral1123g00005 574 CDD RING-Ubox_PUB 274 326 IPR045210 -
Pral1123g00005 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 347 IPR013083 -
Pral1123g00005 574 PANTHER U BOX DOMAIN-CONTAINING 26 566 - -
Pral1123g00005 574 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Pral1123g00005 574 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Pral1123g00005 574 SUPERFAMILY RING/U-box 262 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1123g00005 Pral-Chr1123 47687 51981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1123g00005 4 569 U-box Gene Family AT1G24330 33.103 2.29e-89 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1123g00005 - - gmx:100798951 671.389