Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1123g00001 ATGTCTGGTTGCGGCGGCTACGAGGGGCACGTGATGGGAGCGTGCGCATGTGGCATGTATCACAGCCAAGCCAATCCCTTCCCAATGCTATACACCGACCAAAATTCCTATGCCTATGACTACGACGAATCCGACATGTATTCTTCCCTCACGCCCTCCTCCTCTTCCGTCGACTGCACGCTCTCCCTCGGCACCCCTTCCACCCGCTTGACTCCAGACGAAGAAGGGCGCCGCAGCCGCAACGAACGACGTCGCTCCGTCTCCAACATGTGCTGGGATTTATTACAGTCCAATCAATCCCACAGTGGCAGGTCCAGCAGAGGCGGCTCTTCCTCCTCCAATGATCCCCTTCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCCACGCCCCTCTGGAGAAATGGCCCCAGAGGTCCAAAGTCGCTATGCAATGCCTGTGGGATCAGATACAAGAAAGAAGAGAGGAGAGCCAGCGCCGCCGCAGCCGCCGCCACGGCTTCGGCGTCGGGCGGAGTTATGGAGCCCCAGGCGATGTACGGACACCAAGACAATTACTGGTATGGGCAGTCGTACTCAGAGGCCCACAGAATGCCGTACTACTCGCCGGGAATGGAGGAAGACGGCAATGGAGAATCCGACAACGGCATGCCTTTTCTCTCTTGGAGACTAAACGTAACAGACAGGCCGAGCCTCGTCCATGACTTCACAGGATAA 717 0.5788 MSGCGGYEGHVMGACACGMYHSQANPFPMLYTDQNSYAYDYDESDMYSSLTPSSSSVDCTLSLGTPSTRLTPDEEGRRSRNERRRSVSNMCWDLLQSNQSHSGRSSRGGSSSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAAAATASASGGVMEPQAMYGHQDNYWYGQSYSEAHRMPYYSPGMEEDGNGESDNGMPFLSWRLNVTDRPSLVHDFTG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1123g00001 238 ProSitePatterns GATA-type zinc finger domain. 122 147 IPR000679 GO:0006355|GO:0043565
Pral1123g00001 238 Gene3D - 118 184 IPR013088 GO:0006355|GO:0008270
Pral1123g00001 238 Pfam GATA zinc finger 122 156 IPR000679 GO:0006355|GO:0043565
Pral1123g00001 238 MobiDBLite consensus disorder prediction 71 85 - -
Pral1123g00001 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 157 - -
Pral1123g00001 238 SMART GATA_3 116 172 IPR000679 GO:0006355|GO:0043565
Pral1123g00001 238 MobiDBLite consensus disorder prediction 51 69 - -
Pral1123g00001 238 MobiDBLite consensus disorder prediction 51 85 - -
Pral1123g00001 238 ProSiteProfiles GATA-type zinc finger domain profile. 116 152 IPR000679 GO:0006355|GO:0043565
Pral1123g00001 238 CDD ZnF_GATA 121 153 IPR000679 GO:0006355|GO:0043565
Pral1123g00001 238 PANTHER GATA TRANSCRIPTION FACTOR 18 12 237 IPR044272 GO:0003700|GO:0009908
Pral1123g00001 238 MobiDBLite consensus disorder prediction 98 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1123g00001 Pral-Chr1123 1310 2811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1123g00001 4 237 C2C2-Gata Transcription Factor Family AT3G50870 41.404 8.09e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral1123g00001 GATA 6.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1123g00001 - - pcin:129312177 307.76