Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1117g00009 ATGCCGGGAACAAGGCCATCGGAACAAGATGTGTACGGGGCGAGCAGGAGCTACGATGATCCGCCGTCCTCGTCGAGATCCTCAGGGATGATGACGACTATGAGAGGTCGAGGAGGAATAAGCTGCCAAGATTGCGGGAACAAAGCCAAGAAGGATTGCCCCCACATGAGGTGCAGGACTTGCTGTAAAAGCAGAGGCTTCCATTGCCAAACACACATCAAAAGCACTTGGGTTCCTGCTCCTAAGCGTCGCGAGCGCCAACAGCAACACCAACTCCAACTTCACCCGGACACTCTTCCCAGAAGACACCGCGAAACAGTGGTAAGCTCGCCTGCGGATTTCCGATGTGTGCGGGTGAACTCCATTGACGATGCGGACGAACAATTTGCATACCAAACGGCAGTGAACATAGGAGGGCATGTGTTCAAAGGAATTCTGTACGACCAGGGTCCTGAATATAACTACACAGCTGGAGATGTGAGCGCCCCCGCTGGCGTAGGTGGAGTTCAACCATTGAACCTCATTGCCGGTGCCGCCAGCGGTGCGTCTGTTTTACCCGCGAGCTCAATGGGTGGTGGGTGCCATGGTTCCGCCGGGGGGGCGCTTGGGGATCCTTCTTCTTTGTATCCAGCTCCACTTAACACCATCATGGCTGAAG 658 0.5517 MPGTRPSEQDVYGASRSYDDPPSSSRSSGMMTTMRGRGGISCQDCGNKAKKDCPHMRCRTCCKSRGFHCQTHIKSTWVPAPKRRERQQQHQLQLHPDTLPRRHRETVVSSPADFRCVRVNSIDDADEQFAYQTAVNIGGHVFKGILYDQGPEYNYTAGDVSAPAGVGGVQPLNLIAGAASGASVLPASSMGGGCHGSAGGALGDPSSLYPAPLNTIMAE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1117g00009 219 NCBIfam LRP1 C-terminal domain 108 151 IPR006511 -
Pral1117g00009 219 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 30 214 IPR007818 GO:0003700|GO:0006355
Pral1117g00009 219 MobiDBLite consensus disorder prediction 1 33 - -
Pral1117g00009 219 NCBIfam putative zinc finger domain, LRP1 type 41 83 IPR006510 -
Pral1117g00009 219 MobiDBLite consensus disorder prediction 18 33 - -
Pral1117g00009 219 Pfam Domain of unknown function (DUF702) 106 152 - -
Pral1117g00009 219 Pfam Domain of unknown function (DUF702) 39 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1117g00009 Pral-Chr1117 55773 57001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1117g00009 30 218 C2H2 Transcription Factor Family AT5G66350 50.000 8.09e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral1117g00009 DUF702 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1117g00009 - - pcin:129311615 306.605