Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1112g00001 ATGTCTATAGCTACAAAACCAGGGGTTGGGTCTAATGAAGAAGAAACTGAGCTCAGAAGAGGACCTTGGACTCTGGAAGAAGACAGTTTACTCATACACTGTATCGCTCTTCACGGTGAAGGTCGTTGGAACATGTTGGCCAAAAGTGCAGGATTGAAAAGAACAGGAAAGAGTTGCAGACTGAGGTGGCTCAACTACTTGAAACCAGACATCAAGAGAGGGAATCTGACTCCACAAGAGCAACTTTTGATTCTTGAACTCCATTCCAAATGGGGAAACCGGTGGTCGAAAATTGCTCAGCGTCTGCCCGGAAGAACAGACAATGAGATCAAGAATTACTGGAGGACAAGAGTTCAGAAACAGGCACGCCAGCTCAACATTGAGTCCGGTAGTGAGAGATTCATCGATGCTGTTCGATGTTTCTGGATGCCTAGGTTGTTACAAAAGATGGAACAAAACTCTTCATCATCTTCCTCTTCCTCTGTCATGAACATGAACTCTCAGAATTCTGCAATTAATGTCCCTTCCCTGTCTCCTTCACTAGGAGAATTCACAGATATTGCAGCAAATCACACAAGAACCCACACCACCACCACCACCTACAACAACAATTTTGATTTCCCAGATCATTATTCCCTGCCATTACAAGAACCGTTTGAAATATCAGAAAACCCGACAAGTACTGCCCTTCCTCAAGTGTCTGAGAACTACAACAATGATGTTTGCTTCAATCCAGTTCAAGATCATAGTTATGGCATGGAAGGGCTAAATTTGGAGCCATTTTCAAGAACTGAAAGTAATTATGGGATTCCCAAGTTTGATTATTGTCAGAGTTCAGAAAGTGAATGGATGGGAGAATATTCTCTGTGGAACTTGGATGAAATGTGA 888 0.4279 MSIATKPGVGSNEEETELRRGPWTLEEDSLLIHCIALHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQRLPGRTDNEIKNYWRTRVQKQARQLNIESGSERFIDAVRCFWMPRLLQKMEQNSSSSSSSSVMNMNSQNSAINVPSLSPSLGEFTDIAANHTRTHTTTTTYNNNFDFPDHYSLPLQEPFEISENPTSTALPQVSENYNNDVCFNPVQDHSYGMEGLNLEPFSRTESNYGIPKFDYCQSSESEWMGEYSLWNLDEM 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1112g00001 295 FunFam Myb transcription factor 20 72 - -
Pral1112g00001 295 Gene3D - 76 118 - -
Pral1112g00001 295 SMART sant 19 69 IPR001005 -
Pral1112g00001 295 SMART sant 72 120 IPR001005 -
Pral1112g00001 295 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Pral1112g00001 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 67 IPR017930 -
Pral1112g00001 295 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 192 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral1112g00001 295 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Pral1112g00001 295 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Pral1112g00001 295 CDD SANT 77 116 IPR001005 -
Pral1112g00001 295 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Pral1112g00001 295 FunFam MYB transcription factor 76 118 - -
Pral1112g00001 295 CDD SANT 22 67 IPR001005 -
Pral1112g00001 295 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Pral1112g00001 295 Gene3D - 17 73 - -
Pral1112g00001 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1112g00001 Pral-Chr1112 16288 17444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1112g00001 15 159 MYB Transcription Factor Family AT1G68320 82.069 2.11e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1112g00001 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1112g00001 K09422 - gmx:100780759 340.117