Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1108g00002 ATGCAGAGCCAGCTCTTGTGTAGTGGATGTAGGAGCATTTTGCTTTATCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAGTTACCTCGGTTCCTCCACCTGGAATTGAAATGTCTCAGCTTTATTGTGGAGGTTGTCGGACATTGCTAATGTACACACGCGGAGCTCCTAGTGTGAGATGTTCTTGCTGTCAAACCGTAAACCTTGCGTCAGCCTCTAATCAACTCGCTCATATGCATTGTGGAAACTGCCGGACTACGCTCATGTATCCATTTGGTGCCCCATCAGTCAAATGTGCAGTTTGTCACTATATTACTAATGTCAGTATGAGCAATGGAAGGATTCCAATTCCTGTCCAGAGACCTAATGGAACAACCAACTCTGGAACATTGCCTTCTATTCCAACTAGCCAAACTGTCCTGGTTGAAAATCCTATGTCTGTTGATGCAAGTGGGAAACTGGTCAGCAATGTTGTTGTTGGCATTACAGCAGATAAGAAATAA 513 0.4444 MQSQLLCSGCRSILLYPRGATNVCCALCNTVTSVPPPGIEMSQLYCGGCRTLLMYTRGAPSVRCSCCQTVNLASASNQLAHMHCGNCRTTLMYPFGAPSVKCAVCHYITNVSMSNGRIPIPVQRPNGTTNSGTLPSIPTSQTVLVENPMSVDASGKLVSNVVVGITADKK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1108g00002 170 Pfam LSD1 zinc finger 7 31 IPR005735 -
Pral1108g00002 170 Pfam LSD1 zinc finger 84 108 IPR005735 -
Pral1108g00002 170 Pfam LSD1 zinc finger 46 70 IPR005735 -
Pral1108g00002 170 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Pral1108g00002 170 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Pral1108g00002 170 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Pral1108g00002 170 PANTHER PROTEIN LSD1 2 169 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1108g00002 Pral-Chr1108 12462 21515 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pral1108g00002 zf-LSD1 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1108g00002 - K12191 gmx:100776394 306.605