Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1107g00002 ATGGAGCCAGGGTTGGTTTTGAGCGAAATGCAGGAAATGCATTCCGTCGCCGGAGGTAGATTTTTTGGCGCCGGGGGTGCTGCTGGAAACAGGAGGCTCAGACCTCACCACCATCCTCGCAACAACGACAGCCAGGACCACCAGGCCTTGAAGTGCCCGAGGTGTGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAGGGCTGCCGTAGGTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGTTGTCGGAAAGCGAAGCGCTCCAAGCCCAAGAATTCTTCCTCAGAAACTTCCTCCGCCACCGCGACAAAAGCACCACCGCCGGCCCCGTCATCATCGCTACCGGAGCGCGAGGGTAAGACGTCCAACTCTCATTCCAGCAGTGAAAACTCCAGTCTTACCGCTGTCGCCGCCGCCGTCACCACAGAAGCGGTTTCAGCTCCTTCATCCAACTCGACGTCCAATAACTTGTTTGACAATCTTCAGGATTCGAATCCCGTCGTCCATTCTGATTCGAAGCCTAGCTCGGAACCAGGCGTCACTGAACAAGGAGGAGACTTCGGGATTTTCTCGGAGATAGAGAACTTGACGAGCCTGATCACACCCACCAACGAGACCCTGGCGTTCGGCTACGGTAATATCGCCGACGCGTCTTCGTTTCAGCTGTGCAGCCAGTGGCATAAGGGGATGAACACGAGCGGCCGTTGTCAGCAGGAGTTGAAGTGGCCGGAGATGAGGGCGATGACGACCGGATCGTTGATGGAGCAGACGGTGCCTGGGGATTGGCAGGGGAGCACGGATCATCAAAGTTTTTTCGATGTTGGGAACACCGTCGATCAGGTTTTGTGGAGTCACAATCAGTGGAATGAAGACAATTCGAGTCTTTTTCAGCTACCCTGA 951 0.5615 MEPGLVLSEMQEMHSVAGGRFFGAGGAAGNRRLRPHHHPRNNDSQDHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKAKRSKPKNSSSETSSATATKAPPPAPSSSLPEREGKTSNSHSSSENSSLTAVAAAVTTEAVSAPSSNSTSNNLFDNLQDSNPVVHSDSKPSSEPGVTEQGGDFGIFSEIENLTSLITPTNETLAFGYGNIADASSFQLCSQWHKGMNTSGRCQQELKWPEMRAMTTGSLMEQTVPGDWQGSTDHQSFFDVGNTVDQVLWSHNQWNEDNSSLFQLP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1107g00002 316 MobiDBLite consensus disorder prediction 94 203 - -
Pral1107g00002 316 MobiDBLite consensus disorder prediction 26 50 - -
Pral1107g00002 316 MobiDBLite consensus disorder prediction 109 124 - -
Pral1107g00002 316 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 220 IPR045174 GO:0003700|GO:0006355
Pral1107g00002 316 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Pral1107g00002 316 MobiDBLite consensus disorder prediction 132 196 - -
Pral1107g00002 316 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Pral1107g00002 316 Pfam Dof domain, zinc finger 48 104 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1107g00002 Pral-Chr1107 19653 21393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1107g00002 30 316 C2C2-Dof Transcription Factor Family AT5G60850 39.590 2.93e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral1107g00002 zf-Dof 6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1107g00002 - - pcin:129308249 336.65