Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1096g00005 ATGGCGCCATTGCCGGTGGAGCAGACCGGTGAATCAGCACTGACTGACTCACAGAGATCTATGCCGACGCCGTTTCTAACGAAGACCTACCAACTTGTGGATGACCCCTCTGTGGATGACCTGATTTCCTGGAATGAAGATGGAACCAGTTTCATAGTTTGGCGACCCGCTGAATTCGCTCGAGATTTACTTCCAAAGTATTTCAAACACAATAACTTCTCCAGTTTCGTCCGTCAACTAAATACCTATGGATTTCGGAAGGTTGTTCCCGATCGTTGGGAATTCGCTAATGACTGTTTCCGGCGAGGCGAGAGAAGCCTGCTTCGAGACATTCAACGGCGGAAAATATCGGCGTGTACGTCTGCCGTAGCTGCGGCCAGTACAGTGACGGTGGCTGCAGCACCTTCCGCCGTCGTAGGGGTGTCTCCGACCAACTCCGGTGACGAGCAGGTAATCTCTTCGAACACATCTCCGATTGCCGCACATAATACAGTGCAGCTCACCACAAGTTGCACCACTGCACCCGAGCTCTTAGAAGAGAATAAAAAGCTTAGGAAAGAGAACATGCAATTGAGTAATGAATTGAGTCAATTGAAGGGGCTCTGTAATAACATACTGACATTGATGACGAATTATGCTTCAAGCCAATTAGAGTCCAGTAGTGCCGCTGAAGGAAAACCATTGGAGCTTTTACCCGCGACGCAGCTTTCGGCTGAGGAAGCCATCGTAGGAGGCGGCGCTTCGCAGGAGACGAAAGTTACCGAAGCGGAGGTGCCCAAATTGTTTGGGGTTTCAATTGGGGCAAAACGACATCGGAGTTCAGAGGGCGAGGAGGCAGAAAAGGAAGAACAAAATCAAACACAGTTGTCCCAAGAACCCGACGGTGGCTCCGATGTAAAAACAGAGCCGCTAGATGGTAGTAACTCCGATGATCAGGAGACGCCCTGGTTGGAGCTTGGGAAACAATAG 969 0.5026 MAPLPVEQTGESALTDSQRSMPTPFLTKTYQLVDDPSVDDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERSLLRDIQRRKISACTSAVAAASTVTVAAAPSAVVGVSPTNSGDEQVISSNTSPIAAHNTVQLTTSCTTAPELLEENKKLRKENMQLSNELSQLKGLCNNILTLMTNYASSQLESSSAAEGKPLELLPATQLSAEEAIVGGGASQETKVTEAEVPKLFGVSIGAKRHRSSEGEEAEKEEQNQTQLSQEPDGGSDVKTEPLDGSNSDDQETPWLELGKQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1096g00005 322 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1096g00005 322 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1096g00005 322 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1096g00005 322 MobiDBLite consensus disorder prediction 1 21 - -
Pral1096g00005 322 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1096g00005 322 FunFam Heat stress transcription factor B-4 17 115 - -
Pral1096g00005 322 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1096g00005 322 MobiDBLite consensus disorder prediction 264 322 - -
Pral1096g00005 322 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Pral1096g00005 322 Coils Coil 174 201 - -
Pral1096g00005 322 Gene3D - 17 115 IPR036388 -
Pral1096g00005 322 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 286 IPR027725 -
Pral1096g00005 322 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1096g00005 322 MobiDBLite consensus disorder prediction 270 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1096g00005 Pral-Chr1096 22197 24423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1096g00005 16 321 HSF AT4G11660 55.287 1.66e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral1096g00005 HSF_DNA-bind 8.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1096g00005 K09419 - gmx:100791020 419.083