Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1096g00002 ATGGCGACGACTAGGTCATCGAATCCTTCCTCCGATGACATAATCGATTCGACGCCATTCATAGCAAATTCAGGCGGTTCTTCCGACGAATTCAATTCTGGCCGGCGATTTGTTCGCAGGCAGAGCCTGCGCCAAGCGGCTCGGTTCCTGAGGCAGGCCAGTGGGCGTAGGATGATGCGCGAGCCATCGATGCTGGTCAGAGAGACTGCAGCTGAGCAATTGGAGGAGAGACAGGGCGATTGGGCTTATTCTAAACCCGTTGTGATCCTTGATATTATTTGGAACTTCGTCTTTGTTGTTGTGGCTGCTACGATTTTAATTTTGAGTCGAAGCGAGTCGCCGAGCATGCCTTTGAGGTTGTGGATTGTGGGCTACGCTCTGCAATGTATCCTTCACGTGTTCTGCGTTTGCGTTGAATATAGGAGACGGAGGCGGCTCCGGCGGCGCCAGTTTACACCATCCTTGGATGCAGCGCATGGAAGGACGGGCAGCGGTGGGAATCTGAGTCTGGGTTCGAGAGATGGTTCTGGGCACTATGTGGCATTGGCGCAATTCAACGAGGAAGAGGGTACAAGTGTAGCAAAGCATTTGGAGTCAGCAAACACAATGTTTTCATTTATCTGGTGGATCATCGGATTTTACTGGGTATCAGCTGGTGGTCAATCTTTAGTCCTCGATTCTCCATTTTTATACTGGTTATGTATAGCTTTCCTGGGTTTCGATGTTTTCTTCGTTGTATTCTGTGTTGCGCTGGCATTCATCATTGGTATTGCTGTATGCTGCTGTCTTCCATGTATTATTGCACTTCTATATGCCGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAGCAATTGCCTAAGTTCAAATTCCGAAGAATTGACAATGAAGAGAAAGTTGCTGGTAGTGCACAAGAACGAGTTGGTGGAATAATGACTGAATGCGGCACTGATTCACCGAGTGAACACATTCTTTCTGAAGAGGATGCGGAATGCTGCATCTGTCTATCTGCTTATGATGATGGCGTTGACCTTAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAGTGGCTGTACATTAATTCTACTTGTCCTCTCTGCAAGTATAACATCTTGAAGAGAATCAACCAAGAGGAAGCTTAG 1161 0.4755 MATTRSSNPSSDDIIDSTPFIANSGGSSDEFNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMLVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVVVAATILILSRSESPSMPLRLWIVGYALQCILHVFCVCVEYRRRRRLRRRQFTPSLDAAHGRTGSGGNLSLGSRDGSGHYVALAQFNEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLVLDSPFLYWLCIAFLGFDVFFVVFCVALAFIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLPKFKFRRIDNEEKVAGSAQERVGGIMTECGTDSPSEHILSEEDAECCICLSAYDDGVDLRELPCGHHFHCACVDKWLYINSTCPLCKYNILKRINQEEA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1096g00002 386 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Pral1096g00002 386 CDD RING-H2_RNF6-like 332 374 - -
Pral1096g00002 386 MobiDBLite consensus disorder prediction 1 31 - -
Pral1096g00002 386 SUPERFAMILY RING/U-box 324 380 - -
Pral1096g00002 386 MobiDBLite consensus disorder prediction 1 32 - -
Pral1096g00002 386 SMART ring_2 333 373 IPR001841 -
Pral1096g00002 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 383 IPR013083 -
Pral1096g00002 386 FunFam E3 ubiquitin-protein ligase At1g12760 319 384 - -
Pral1096g00002 386 Pfam Ring finger domain 332 374 IPR001841 -
Pral1096g00002 386 PANTHER TARGET OF ERK KINASE MPK-1 53 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1096g00002 Pral-Chr1096 9617 13060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1096g00002 22 384 C3H Transcription Factor Family AT1G68070 47.814 5.74e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1096g00002 - - qsa:O6P43_034207 596.275