Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral107g00013 ATGTCTTCCAGGTTTATAGCAATTTCGGCTGTTTTTACAGCTTTAAGCCTTGTGGGTGTACAATTTGGCTCGGAGTTGTCTCTCAGTAAACTGAAATCAGAAGGAATAATTGGCAAGAATTTAATTCACTTGGATAAGGAGAATGCCAATCATGTCATTGAGTTGTTTTTGGGGTCGTACACCACCATATGGTTGCTCGCAAATTTTGTGATCAATGCATTTATCCTTCTCAATCTTTGTCTCAAGACTATGTTTTTCTCTGAATTGTATCCTGCTGAAATTCGGAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGACATTTCTACCAATGATAGTGCCTCCAACAATATATCAGGCAGGTCTATGGTCTAGTTGGATGATAGTGCTATGTTCTTTAAAGATGTTCCAAACTTTGGCCAGAGATCGTTTAGAGCGATTGAATGCATCTCCATCTGCCAGACCCTGGACTTATGGCCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGACGATATATAAAACACACCCATCCTCTATGCTTCTGTTGCTATTCTACGAGCCTCTTAGTATCGCTTGTGAGACCCTGCAGGCTATATTGGTACATGGCTTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCAATACCACTGATAGTGGAAGGTCAAAACTCTTCGACACATTAGCAGCAGGATCATTATTGGAATGGAAGTGGAGTCTTATTCGGAATTTGGGATTCTTACTAGACATGGCAACTTCTTTTACGGCTCTTGGCCATTACTTCCATATTTGGTGGCTTCATGGCATAGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGAACACTGCTAAGTGCAATTATAAATCGCATAAGAGCCTATATCAGGTTAAGGAAGGCTTTAGGTGCGCTACATGCAGCTCTTCCTGATGCAACTACTGAGGAGTTGTTGTCATATGATGATGAATGTGCTATTTGCAGGGAGCCCATGGCCAAGGCTAAAAAGCTAAACTGCAAACACCTTTTCCACCTTGCGTGTTTGAGATCTTGGCTAGATCAAGGATTGACAGAGATGTATACCTGTCCAACATGTCGGAAGCCACTTTTTGTTGGCCGGCCTCAAAATGAAGCAAGCTTCAATACACGGGAAACATCAAGTGAAGAACCACATGCACACCAAATAGGTTCAGGGCTTGATCAGCCAAACACTGGTAGACATGTCATGGCTGCTGGATTATTTCCCAACCAAACACCAAACATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGTGGCGATGGGGCTGGTCCATCTACTGCAATCAGATCAGTTGGATTAGGAAGGGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATTCTGCCTGGAGCCTTTGGCCTATGAATACTTCTCAGGCTTCTGCAAGTGGTTCCCGGATTCCTCCTTCTCATGGGAGGCTCCCAGGGGGCTCTGATAATGTACACATGAGGAATGCTTCACGTTTTGCAAATGATAATCTGGCAAATATACTGGCTATGGCCGAGACTGTTCGGGAGGTTCTACCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGAGGACAAATTCCGTGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1764 0.4291 MSSRFIAISAVFTALSLVGVQFGSELSLSKLKSEGIIGKNLIHLDKENANHVIELFLGSYTTIWLLANFVINAFILLNLCLKTMFFSELYPAEIRKLVECLINYVIYKGTFLPMIVPPTIYQAGLWSSWMIVLCSLKMFQTLARDRLERLNASPSARPWTYGRVYSALLLVFLVDLFWIRLCLTIYKTHPSSMLLLLFYEPLSIACETLQAILVHGFQLLDIWLHHSACNTTDSGRSKLFDTLAAGSLLEWKWSLIRNLGFLLDMATSFTALGHYFHIWWLHGIAFHLVDAVLFLNIRTLLSAIINRIRAYIRLRKALGALHAALPDATTEELLSYDDECAICREPMAKAKKLNCKHLFHLACLRSWLDQGLTEMYTCPTCRKPLFVGRPQNEASFNTRETSSEEPHAHQIGSGLDQPNTGRHVMAAGLFPNQTPNMEGISWRGAAGLDSPWLHSWPNQGGDGAGPSTAIRSVGLGRVQMMMRHLASVGENAQNALEDSAWSLWPMNTSQASASGSRIPPSHGRLPGGSDNVHMRNASRFANDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQM 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral107g00013 587 CDD CUE_RIN3_plant 548 585 IPR035667 -
Pral107g00013 587 FunFam E3 ubiquitin protein ligase RIN2 313 392 - -
Pral107g00013 587 Gene3D - 546 586 - -
Pral107g00013 587 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Pral107g00013 587 SMART ring_2 340 381 IPR001841 -
Pral107g00013 587 ProSiteProfiles CUE domain profile. 547 587 IPR003892 GO:0043130
Pral107g00013 587 SUPERFAMILY RING/U-box 326 389 - -
Pral107g00013 587 Pfam Ring finger domain 338 382 IPR001841 -
Pral107g00013 587 CDD RING-H2_AMFR 338 385 - -
Pral107g00013 587 MobiDBLite consensus disorder prediction 394 418 - -
Pral107g00013 587 Pfam CUE domain 551 587 IPR003892 GO:0043130
Pral107g00013 587 FunFam E3 ubiquitin protein ligase RIN2 546 586 - -
Pral107g00013 587 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 587 - -
Pral107g00013 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 389 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral107g00013 Pral-Chr107 66411 76273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral107g00013 60 395 C3H Transcription Factor Family AT3G16090 27.869 2.26e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral107g00013 K10636 - gmx:100819656 871.692