Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral107g00012 ATGTCTTCCAGGTTTATAGCAATTTCGGCTGTTTTTACAGCTTTAAGCCTTGTGGGTGTACAATTTGGCTCGGAGTTGTCTCTCAGTAAACTGAAATCAGAAGGAATAATTGGCAAGAATTTAATTCACTTGGATAAGGAGAATGCCAATCATGTCATTGAGTTGTTTTTGGGGTCGTACACCACCATATGGTTGCTCGCAAATTTTGTGATCAATGCATTTATCCTTCTCAATCTTTGTCTCAAGACTATGTTTTTCTCTGAATTGTATCCTGCTGAAATTCGGAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGACATTTCTACCAATGATAGTGCCTCCAACAATATATCAGGCAGGTCTATGGTCTAGTTGGATGATAGTGCTATGTTCTTTAAAGATGTTCCAAACTTTGGCCAGAGATCGTTTAGAGCGATTGAATGCATCTCCATCTGCCAGACCCTGGACTTATGGCCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGACGATATATAAAACACACCCATCCTCTATGCTTCTGTTGCTATTCTACGAGCCTCTTAGTATCGCTTGTGAGACCCTGCAGGCTATATTGGTACATGGCTTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCAATACCACTGATAGTGGAAGGTCAAAACTCTTCGACACATTAGCAGCAGGATCATTATTGGAATGGAAGTGGAGTCTTATTCGGAATTTGGGATTCTTACTAGACATGGCAACTTCTTTTACGGCTCTTGGCCATTACTTCCATATTTGGTGGCTTCATGGCATAGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGAGTAAATATTTGTACACTGCTAAGTGCAATTATAAATCGCATAAGAGCCTATATCAGGTTAAGGAAGGCTTTAGGTGCGCTACATGCAGCTCTTCCTGATGCAACTACTGAGGAGTTGTTGTCATATGATGATGAATGTGCTATTTGCAGGGAGCCCATGGCCAAGGCTAAAAAGCTAAACTGCAAACACCTTTTCCACCTTGCGTGTTTGAGATCTTGGCTAGATCAAGGATTGACAGAGATGTATACCTGTCCAACATGTCGGAAGCCACTTTTTGTTGGCCGGCCTCAAAATGAAGCAAGCTTCAATACACGGGAAACATCAAGTGAAGAACCACATGCACACCAAATAGGTTCAGGGCTTGATCAGCCAAACACTGGTAGACATGTCATGGCTGCTGGATTATTTCCCAACCAAACACCAAACATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGTGGCGATGGGGCTGGTCCATCTACTGCAATCAGATCAGTTGGATTAGGAAGGGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATTCTGCCTGGAGCCTTTGGCCTATGAATACTTCTCAGGCTTCTGCAAGTGGTTCCCGGATTCCTCCTTCTCATGGGAGGCTCCCAGGGGGCTCTGATAATGTACACATGAGGAATGCTTCACGTTTTGCAAATGATAATCTGGCAAATATACTGGCTATGGCCGAGACTGTTCGGGAGGTTCTACCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGAGGACAAATTCCGTGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1776 0.4274 MSSRFIAISAVFTALSLVGVQFGSELSLSKLKSEGIIGKNLIHLDKENANHVIELFLGSYTTIWLLANFVINAFILLNLCLKTMFFSELYPAEIRKLVECLINYVIYKGTFLPMIVPPTIYQAGLWSSWMIVLCSLKMFQTLARDRLERLNASPSARPWTYGRVYSALLLVFLVDLFWIRLCLTIYKTHPSSMLLLLFYEPLSIACETLQAILVHGFQLLDIWLHHSACNTTDSGRSKLFDTLAAGSLLEWKWSLIRNLGFLLDMATSFTALGHYFHIWWLHGIAFHLVDAVLFLNIRVNICTLLSAIINRIRAYIRLRKALGALHAALPDATTEELLSYDDECAICREPMAKAKKLNCKHLFHLACLRSWLDQGLTEMYTCPTCRKPLFVGRPQNEASFNTRETSSEEPHAHQIGSGLDQPNTGRHVMAAGLFPNQTPNMEGISWRGAAGLDSPWLHSWPNQGGDGAGPSTAIRSVGLGRVQMMMRHLASVGENAQNALEDSAWSLWPMNTSQASASGSRIPPSHGRLPGGSDNVHMRNASRFANDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQM 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral107g00012 591 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 591 - -
Pral107g00012 591 CDD CUE_RIN3_plant 552 589 IPR035667 -
Pral107g00012 591 Gene3D - 550 590 - -
Pral107g00012 591 Pfam CUE domain 555 591 IPR003892 GO:0043130
Pral107g00012 591 SMART ring_2 344 385 IPR001841 -
Pral107g00012 591 FunFam E3 ubiquitin protein ligase RIN2 550 590 - -
Pral107g00012 591 CDD RING-H2_AMFR 342 389 - -
Pral107g00012 591 ProSiteProfiles Zinc finger RING-type profile. 344 386 IPR001841 -
Pral107g00012 591 SUPERFAMILY RING/U-box 330 393 - -
Pral107g00012 591 ProSiteProfiles CUE domain profile. 551 591 IPR003892 GO:0043130
Pral107g00012 591 MobiDBLite consensus disorder prediction 398 422 - -
Pral107g00012 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 393 IPR013083 -
Pral107g00012 591 FunFam E3 ubiquitin protein ligase RIN2 317 396 - -
Pral107g00012 591 Pfam Ring finger domain 342 386 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral107g00012 Pral-Chr107 66411 76273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral107g00012 60 399 C3H Transcription Factor Family AT3G16090 27.371 3.96e-28 116