Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1077g00004 ATGTCGTCCGCCGGCGGCGACGGTGGAGGGAGCGGCGGCGGGATTGCTTTCAGCGGTTCTTCTCAACTCTATTTTTGCCATGAGTGCAACGCCACCGTATCCATTAGGACTTCATCTTCCTCTGATCTCGCTTGTCCCAATTGCAACGGCGGCTTCATTGAGGAAGTCGATAATCCCGCCCCTAATTTTTCTAATCCCTTCTTTTCGTTTACTTCTGAGTTTGGCGGCGGCGGTGCCGGCTTTCCTCTAGTATTTTCCACCACTTCCACCGGCGGCGGTAGTGGTGCTGGTGCACCGATAATCGACGATCTCTCTACTCTCTTCGGTGGTGGACCTAATCGATCGTCTCCGTTCGGGGAAACTGATGCGTTCAACCCTTTTGTTTTTCTTCAGAACTATCTTCAAACCCTGAGAGCCGGCGGTGCTAATGTTCAATTTGTGATAGAGAACTCTGGAGACCCCGGTGGAACCTTCCGTCTGCCCGCGAATCTCAATTTTGGTGATTATTTTTTTGGACCTGGCCTCGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCTAACCGACACGGGACGCCTCCAGCTTCGAAATCTGCCATTGAGGGCCTTCCTACGATTAAGATTTCAGAAGAGTTGCTGGCTTCGGAATCATCGCAGTGTGCCGTTTGTAAAGATACATTTGAGCTCGAGGAAGAGGCGAAGCAGATGCCATGTAAACATATATATCATTCAGATTGCATTTTGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTTTGCCGTTACGAGTTACCAACGGATGATCCTGACTACGAACAACGAGCTGGTGGGACATCTACACAGGAGAATCGAAATCAATCTGCAGGGGAAGGTGAGTCCGCTGGTTCTTCTGAAGGAGGTAATGGGGGCAGCGGTGACGGTGGTAGTGCAACATCTGGAGAAGACACACCGAGAGAACGCAGGTTTAGGGTTTCTTTGCCTTGGCCTTTTAGGCAACTAGCTTCCATAGCCGAGACTAGCAGTACTGGGAATGCCAACGTCAGCGGAAATAATAGCGGGGAATCAAATTCCGGAAGAAGTGGAAACCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTCGATTAA 1128 0.4991 MSSAGGDGGGSGGGIAFSGSSQLYFCHECNATVSIRTSSSSDLACPNCNGGFIEEVDNPAPNFSNPFFSFTSEFGGGGAGFPLVFSTTSTGGGSGAGAPIIDDLSTLFGGGPNRSSPFGETDAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPGGTFRLPANLNFGDYFFGPGLEQLIQQLAENDPNRHGTPPASKSAIEGLPTIKISEELLASESSQCAVCKDTFELEEEAKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRAGGTSTQENRNQSAGEGESAGSSEGGNGGSGDGGSATSGEDTPRERRFRVSLPWPFRQLASIAETSSTGNANVSGNNSGESNSGRSGNQNFESETRQEDLD 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1077g00004 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 265 - -
Pral1077g00004 375 MobiDBLite consensus disorder prediction 271 375 - -
Pral1077g00004 375 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Pral1077g00004 375 Pfam zinc-ribbon 22 55 IPR039525 GO:0061630
Pral1077g00004 375 CDD RING-H2_RNF126-like 219 261 - -
Pral1077g00004 375 MobiDBLite consensus disorder prediction 273 311 - -
Pral1077g00004 375 Pfam Ring finger domain 219 261 IPR001841 -
Pral1077g00004 375 SMART ring_2 220 260 IPR001841 -
Pral1077g00004 375 MobiDBLite consensus disorder prediction 334 365 - -
Pral1077g00004 375 SUPERFAMILY RING/U-box 200 267 - -
Pral1077g00004 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 267 IPR013083 -
Pral1077g00004 375 FunFam E3 ubiquitin-protein ligase RING1-like 181 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1077g00004 Pral-Chr1077 12549 17762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1077g00004 161 308 C3H Transcription Factor Family AT5G01980 43.243 2.09e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1077g00004 K11982 - qsa:O6P43_005293 440.269