Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1070g00001 ATGTCCAACTCCGACGCCGGTGCCGTTACTGATCCATCCACAACTCCAAGCAGCACCCAGAAACAGCATTCTCGAAGTAAACGAAAGAAACGAATTGCCATCATGGACCACAAGGTGGCTTTCAAGCCCAAATACGCCAAACAACCCCGCCCTGACGCGCCTATGATCACCCGCCCATGCACCGAGTGCGGCAAGAAGTTCTGGTCATGGAAGGCGCTCTTCGGCCACATGCGCTGTCATCCCGAGCGGCAGTGGCGCGGCATAAACCCGCCCCCAAATCTCCAACGACAGCCTCCTCCGGAGAAGCAAACACCAGAACTCATGACCCCAGAAGACCACGAAATCGCGGCCGGTCTTCTGTTGCTGGCGAACTCGGAGGGGGCGGGAGCGTCGCGGTTCGAGTGCTCCAGTTGCAAGAGGGTGTTTGGGTCACACCAGGCTCTGGGAGGGCACAGGGCGAGCCACAAGAATGTGAAGGGGTGTTTCGCGAACGAAGATGAGGAGATGATGATGGTTTTGGAAGAGCACAAGTGCAGCAGATGCCTGAGGGTATTTCCGAGTGGGCAAGCGCTGGGTGGTCACATGAGGCGTCACTGGGAAAAAGCAGACCCCGAGCCTCCTCATCCTTCCATCCCCCATCTGCATCATCCAGGCTGTGGCCTTGACCTCAATTTGCCTCCCCCTCTCCCCCCTGATTCCTCCTCTCCCTTCGCTCTGGATTTGAGACTGGGACTTTAA 738 0.5759 MSNSDAGAVTDPSTTPSSTQKQHSRSKRKKRIAIMDHKVAFKPKYAKQPRPDAPMITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLQRQPPPEKQTPELMTPEDHEIAAGLLLLANSEGAGASRFECSSCKRVFGSHQALGGHRASHKNVKGCFANEDEEMMMVLEEHKCSRCLRVFPSGQALGGHMRRHWEKADPEPPHPSIPHLHHPGCGLDLNLPPPLPPDSSSPFALDLRLGL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1070g00001 245 SMART c2h2final6 133 155 IPR013087 -
Pral1070g00001 245 SMART c2h2final6 58 80 IPR013087 -
Pral1070g00001 245 SMART c2h2final6 176 198 IPR013087 -
Pral1070g00001 245 Pfam C2H2-type zinc finger 176 200 - -
Pral1070g00001 245 Pfam C2H2-type zinc finger 132 156 - -
Pral1070g00001 245 Pfam C2H2-type zinc finger 59 82 - -
Pral1070g00001 245 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Pral1070g00001 245 MobiDBLite consensus disorder prediction 1 34 - -
Pral1070g00001 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Pral1070g00001 245 SUPERFAMILY beta-beta-alpha zinc fingers 175 201 IPR036236 -
Pral1070g00001 245 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Pral1070g00001 245 MobiDBLite consensus disorder prediction 1 21 - -
Pral1070g00001 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Pral1070g00001 245 SUPERFAMILY beta-beta-alpha zinc fingers 59 155 IPR036236 -
Pral1070g00001 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 198 IPR013087 -
Pral1070g00001 245 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 245 - -
Pral1070g00001 245 MobiDBLite consensus disorder prediction 83 106 - -
Pral1070g00001 245 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Pral1070g00001 245 Gene3D Classic Zinc Finger 130 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1070g00001 Pral-Chr1070 2727 3464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1070g00001 45 245 C2H2 Transcription Factor Family AT4G35280 54.545 9.04e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1070g00001 zf-C2H2_6 4.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1070g00001 - - tcc:18607398 240.736