Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1068g00005 ATGAGCTCCTCAGAGGCCAAGTCGTTGCCCTTCAAGTCTAAGAAGCCCCATATCTGCCACTCAGCCTCCAAATCCCAATCACCAGATCCCATTTCACTGAGCTCCAAAACACCAGAGAAGGCCTCACAGCTCTCGCACCGTACCAGAAACCGCGGCGTTGCGCTCTCTATTAGAGAAGTTAGGAAAGTCGCTGAAAGCCTCCAGGATAAGAAAGGCCAGCGGCAGAATCATGATCGTACGGGGCAGATCAAGTCCGCCCGAAGGAAGATTGCACCGTCTTTCGCTGAAATCTCCCCCCGCAAATCCAAGGCATCTGTAGATGAGCCCGTCAAGATGCCGGAAAAGTATGAAATTTTGGGTCAGTTCTTTGACAGCTTGGATAGCTCGATAAGGTTGTTGCAGTTGAAAGGATCTACAACAACTTTCACGAATATCTGCCCCAAAATTGAATGTTTAACTGATAGGAGATTTACGCATAGTCATCTGGCCCAGTTGAAATATATCTTTCCAGAGGCACTTGTTATAAAGAAGGTGCTCAGGTTTGATGAACGAACAAGTTGTATGAAGCCAGACCTCCATCTTACATTAAATCCCGATTCAAAGTTGCTTTCTGAAGGTGGAAATGTGTCCTTGCGAAAGTTATTTCGCACACGGTTAAGAGATTTTTATGAATCACATCCTGAGGTTGATGAGATTCCAGAAGAAATGCTGCCTGAGCCGTTCAATCACCGTAAGCAAGATCGTCCTTTAGAAACATTGAGAACTACCTCCTCATCATTTGATACGATACCATCAAATGATGCAGTTGCACCTCGTCGAGCTGCAGAACCTGAGAGCATGCAACATAATGCCATGGTAATCAATTCAGAGCCTGCTAAGGGCGAAGAAAACTTGTCAATGCCTGTTAACATGTCAAATGAAGCACATCATCAACAACGAGCAGTAGCCACTCATATGTCTCATTCTTTTAGAAGGCGCTTTTCTCAGAAATATGTAAAAGATGAAGCAGATGGTGTTCAACAAAAGTCACCATCAGATTCATTGCCTCCTCAATCTGTCCCAGTTTCAGAATCAAGCATGAAGAAAAATTCATCAAGTGTAGACGCTACTATGTGCCCGGCAATATGTGCTTCTCCAGCTAATCTCAAATCATCTAGTGCTTCAGCTGCCACACCAAATAAAGTTGCTTCTACTCCCTCTAGGTTGATGACTCATACACCTTCGTTGCCTCCCCCTAAGAGATGTTACATGAGCCCCGATGATAGCCCTTGCAGCTCACCAAACAAGTTAGTTAGGCGTCCAACGAGTTTGAAGAAGTCATTGAACTTTGACACGCCAGTGAAAAATCGGAGGACAGAGAATGAAGCTGATGATGCTGGTGGCTTGTCAATTGATGACGATATTTATGATATTCTCCCGGAGGGTCTCCTCCAATCGATTAAAGAAAAGGAGAGAGTGGCAATGGAGGAAAGAAATCCGGCTATCTCACAAGCAAAAAGACGGAAAAAAATGATTGCCTGCCTCCCTAAGCTATTTAACATGATTCATCTCTTGATTCATTCATTGAATCGTTCTGTTGTCACAAAAGAGGAGCTCCTAAGCAAGATAATCTCAAACCATTGTGATATTGTTGACCGGAGAGAAGTTGAAGAGCAGCTGAATTTGTTGCTAGAACTAGTTCCAGAATGGATATCTAAAAAGTTGGCTTCTAGTGGAGATCTGCTATTCTGCATAAATAAACTGCAGGACCCTGAGACCATACGATCACGGCTTGCAGAAGCAAAATGA 1788 0.4396 MSSSEAKSLPFKSKKPHICHSASKSQSPDPISLSSKTPEKASQLSHRTRNRGVALSIREVRKVAESLQDKKGQRQNHDRTGQIKSARRKIAPSFAEISPRKSKASVDEPVKMPEKYEILGQFFDSLDSSIRLLQLKGSTTTFTNICPKIECLTDRRFTHSHLAQLKYIFPEALVIKKVLRFDERTSCMKPDLHLTLNPDSKLLSEGGNVSLRKLFRTRLRDFYESHPEVDEIPEEMLPEPFNHRKQDRPLETLRTTSSSFDTIPSNDAVAPRRAAEPESMQHNAMVINSEPAKGEENLSMPVNMSNEAHHQQRAVATHMSHSFRRRFSQKYVKDEADGVQQKSPSDSLPPQSVPVSESSMKKNSSSVDATMCPAICASPANLKSSSASAATPNKVASTPSRLMTHTPSLPPPKRCYMSPDDSPCSSPNKLVRRPTSLKKSLNFDTPVKNRRTENEADDAGGLSIDDDIYDILPEGLLQSIKEKERVAMEERNPAISQAKRRKKMIACLPKLFNMIHLLIHSLNRSVVTKEELLSKIISNHCDIVDRREVEEQLNLLLELVPEWISKKLASSGDLLFCINKLQDPETIRSRLAEAK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1068g00005 595 SMART CDT1_2 112 239 IPR014939 -
Pral1068g00005 595 MobiDBLite consensus disorder prediction 1 86 - -
Pral1068g00005 595 CDD Cdt1_c 471 592 IPR032054 -
Pral1068g00005 595 PANTHER DNA REPLICATION FACTOR CDT1 16 595 IPR045173 GO:0003677|GO:0030174|GO:0071163
Pral1068g00005 595 Gene3D - 466 595 IPR038090 -
Pral1068g00005 595 MobiDBLite consensus disorder prediction 381 432 - -
Pral1068g00005 595 SUPERFAMILY "Winged helix" DNA-binding domain 105 241 IPR036390 -
Pral1068g00005 595 MobiDBLite consensus disorder prediction 42 85 - -
Pral1068g00005 595 Pfam DNA replication factor Cdt1 C-terminal domain 476 566 IPR032054 -
Pral1068g00005 595 MobiDBLite consensus disorder prediction 333 364 - -
Pral1068g00005 595 Pfam DNA replication factor CDT1 like 113 224 IPR014939 -
Pral1068g00005 595 CDD Cdt1_m 98 262 IPR014939 -
Pral1068g00005 595 MobiDBLite consensus disorder prediction 341 364 - -
Pral1068g00005 595 MobiDBLite consensus disorder prediction 20 41 - -
Pral1068g00005 595 MobiDBLite consensus disorder prediction 381 404 - -
Pral1068g00005 595 FunFam CDT1-like protein a chloroplastic 465 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1068g00005 Pral-Chr1068 26199 29314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1068g00005 6 593 Core DNA Replication Machinery Family AT2G31270 44.137 1.15e-122 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1068g00005 K10727 - qsa:O6P43_006919 618.616