Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1062g00005 ATGCCTATTGTAAGGAAGCTGCGAATTGTTTTAGGGTTCACATTTGTGAAACAAATGGCACCCAACCCTAGGGTGACTGCAGCCTATCGTGCAATGACTGTTCTTGGCATTAAGGAAGTTAAAGTTAAACCAGTATTGAAGCAACTTCTCAAACTGTATGATAAGAACTGGGAACTTATCGAACAAGAGAACTATAGAGCTCTTGCAGATGCTATATTTGAGCAGGAGGAAAAAGAGTTGCAGGGAAAGAGGAAAAAAAACCAGGACAATGATGAAGGAGAGATGGAGGATGAAGAAGCTCAGATGCAAGATGAATCAGTGCGACCTTTGAAGAGGTTACGTTTAAGAGGCCAAGAGAATCAGGCTTCACAACCTCTGAGTATTTGCGGAACCAGTTCAGCTGCCTCCCCATCTAAAATACCTAAAGTAGAAGATGATAAAGTGCCTGAAAGATGTTCCCACCAGCAGCCTCAATACAAGGCAATGTCGCCTCAGTCCAATAAAAGTGCAGAGACTGAAGTTCGCCCTGCCCCGGTGCGAGATAGCATTGTTAACAAGGGAAAGCAACCTTTATCACCTCAAGCTGCTCCTGGAGGAAGAAGATTTGGATCCGAAAGAGCATCTCCATCAGTGCCATGTAAAGAACCTACAGCTGAACGGAGAATTGTGCCGCTACAGAAAGACCAGTTGCCCTATACTTATGCATTAATCAAGCCCAAAGATGAGCCTATAGATGAACTGGTAGATTATGATGCTCCTATTGCAGCAATTCTTCCTGAACTGCCTGGTGGAAGAGACCCTCCGATGCAGCATGATCCAACTAGAAAACAAGACAGGAATGGTTCTTTAATGTCAAAATGTGGAGATGATGGTAGAGGCAAAGGTATTCGGGATTCATCAGATGAAGCGAACCATGAGGTTGCAACAAACCAAGAATGTTCTACTATAGAGATAGCCTCCTCAACATCAGGAGAGGAGGGATCTGAAATGATGACATCAAGTCTTGTATTGAAGGAATCGCAAGCACGTGATGCTCTGAATATCAGAGGCAATACAGAAGATTTAGGAATGCATGCTGGCACGTCAAATGGATCAATCAACATTCAGTCTTCTTCTGCACTGGTTGCATCTCGCATTTCCACTTCTCCCCCGCTTTTGAGTGGTATGAATGGTGCTATACCAGTCACCAATAAGGCCGGAAGTGATTTTCCAGAGTGTGGTGATGGAAAAGGGCTGGAGGATCCTACATCTCCACATTTAGGTAGTTTGGTTGTTGTTCAACAGCATCAGCTTACTCCCGATGATCTAAGGTCTCTTCATGGTGCTGAAGACCTTTCAAAAGGAGAAGAAAATCTTAGAATTCCATGGGTGAATGAAATAACTAATGATTTCCCTCCACCTTTTCACTATCTGCACCAAAGCATTGGTTTCAGAGATGCTTATGTTAACTGGTGTCTTTCAAACATAAAGTGTGAGGATTACTGTTCAACTTGTTTGGGCGATTGTCTTCTGTCCCCAGCGTCTTGTGTTTGTGCAAATAAAACTGAGGGTGGATATGCATACACGTCTGAAGGGCTACTGAAGGAAAAGTTCTTGGAAGAGTGTATTACCATTAGCCGCAACCCTCAACAACATCAGTTCTATTGTAGAACCTGCCCTCTTGAAAGAGCAAAGAATGATGATTGTTTAGAACCATGCAAAGGACACTTAAAGAGAAAGTTTATCAAAGAATGTTGGGTGAAATGTGGCTGTGTGAAACAATGCGGCAATAGGGTTGTCCAACGAGGAATCACTTTCCAATTGCAGGTGTTTTTCACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGAGCTGCCAAAAGGTGCATTTGTGTGTGAATTTGTGGGAGAAATATTAACTCTCAAAGAGTTGCACGAGAGAAACATGCAGTGTGCCCAAAATGGAACATACACATATCCAGTTCTATTAGATGCAGATTGGGATTCAGGGGTTATAACTGATAAAGAAGCTCTTTGCTTGGACGCGGCATCTTATGGGAATATTGCTAGGTTTATAAATCACAGATGTTTGGATGCAAACCTGATCGAAATCCCAGTTGAAGTTGAAACCTCGGATCATCACTACTTTCATCTTGCTTTCTTCACATCCAGAAAAGTAGCTGCACTGGAAGAGCTTACTTGGGATTATGGCATTGACTTTGATGACAATGAGGGTCCTGTTAAGCCATTCTCTTGCAGATGTGGCAGCAAGTTCTGCAGGAAGATGAAGCGATCAACTAGGTCCAATAGATCTGCTTCTGTTGCATGA 2313 0.4302 MPIVRKLRIVLGFTFVKQMAPNPRVTAAYRAMTVLGIKEVKVKPVLKQLLKLYDKNWELIEQENYRALADAIFEQEEKELQGKRKKNQDNDEGEMEDEEAQMQDESVRPLKRLRLRGQENQASQPLSICGTSSAASPSKIPKVEDDKVPERCSHQQPQYKAMSPQSNKSAETEVRPAPVRDSIVNKGKQPLSPQAAPGGRRFGSERASPSVPCKEPTAERRIVPLQKDQLPYTYALIKPKDEPIDELVDYDAPIAAILPELPGGRDPPMQHDPTRKQDRNGSLMSKCGDDGRGKGIRDSSDEANHEVATNQECSTIEIASSTSGEEGSEMMTSSLVLKESQARDALNIRGNTEDLGMHAGTSNGSINIQSSSALVASRISTSPPLLSGMNGAIPVTNKAGSDFPECGDGKGLEDPTSPHLGSLVVVQQHQLTPDDLRSLHGAEDLSKGEENLRIPWVNEITNDFPPPFHYLHQSIGFRDAYVNWCLSNIKCEDYCSTCLGDCLLSPASCVCANKTEGGYAYTSEGLLKEKFLEECITISRNPQQHQFYCRTCPLERAKNDDCLEPCKGHLKRKFIKECWVKCGCVKQCGNRVVQRGITFQLQVFFTSEGKGWGLRTLEELPKGAFVCEFVGEILTLKELHERNMQCAQNGTYTYPVLLDADWDSGVITDKEALCLDAASYGNIARFINHRCLDANLIEIPVEVETSDHHYFHLAFFTSRKVAALEELTWDYGIDFDDNEGPVKPFSCRCGSKFCRKMKRSTRSNRSASVA 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1062g00005 770 SMART set_7 599 738 IPR001214 GO:0005515
Pral1062g00005 770 MobiDBLite consensus disorder prediction 306 334 - -
Pral1062g00005 770 SMART preset_2 442 583 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral1062g00005 770 Pfam Ubiquitin-binding WIYLD domain 24 78 IPR018848 -
Pral1062g00005 770 Pfam SET domain 611 732 IPR001214 GO:0005515
Pral1062g00005 770 CDD SET_SETDB-like 466 732 - -
Pral1062g00005 770 MobiDBLite consensus disorder prediction 269 305 - -
Pral1062g00005 770 MobiDBLite consensus disorder prediction 118 216 - -
Pral1062g00005 770 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 19 766 - -
Pral1062g00005 770 MobiDBLite consensus disorder prediction 79 106 - -
Pral1062g00005 770 Gene3D SET domain 445 757 IPR046341 -
Pral1062g00005 770 SUPERFAMILY SET domain 451 756 IPR046341 -
Pral1062g00005 770 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 770 IPR025776 -
Pral1062g00005 770 MobiDBLite consensus disorder prediction 118 138 - -
Pral1062g00005 770 Pfam Pre-SET motif 446 591 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral1062g00005 770 MobiDBLite consensus disorder prediction 259 334 - -
Pral1062g00005 770 MobiDBLite consensus disorder prediction 156 172 - -
Pral1062g00005 770 FunFam SET-domain containing protein lysine methyltransferase family protein 445 757 - -
Pral1062g00005 770 Gene3D - 14 78 IPR043017 -
Pral1062g00005 770 ProSiteProfiles SET domain profile. 599 732 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1062g00005 Pral-Chr1062 13546 20675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1062g00005 575 757 C2H2 Transcription Factor Family AT2G23740 40.212 6.30e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral1062g00005 Pre-SET 7.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1062g00005 - - qsa:O6P43_006850 846.654