Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1062g00001 ATGGAAGCACGCCCTGCTTTTTCCATTGAAAGATCAAGTGCAAAGCAACTCAGTAGCATGGGAATGTCTGGAGCACTGTCTTCGTCTCTGCCTGTCCACCCAACACCCATAGAAGAGACATATTCCAAGTTACCTGATTCTCAGCAGGTTTTTGTGGAAAAAGAGCACTCGGAAAGACCTGTCGCTCACTCAAGTCATTTAAATTCCAGCGGAGCAGTTGGGCACATGTTTTCATCATCCCCTGGATATTCTACTGATCTTCATCACTCATCCCTTTCACCTCATGGAAAACACTCAAGAAATTCGCATTTTATTTCACAGTCTTCGAGTAACATGGCATCACTGCCATTGACATATTCTTCAAGTACCGGACCACTGCCTTCTACAACATCAACTTGTTATTCCAAAGAAAGTAATGGGTCGTGGGCTTTAGATTCCTTCCCAAACATTCTTGATTTTCCTGTACATACTTCCATTAAGGATAGTCAAGTAGAAGGCAGTGCCTGCAATATGATGGCACCTGATGAGTATGGTAAAAGAAATGACTGGCAGGAGTGGGCTGATCAACTGATCAATGATGATGATGCATTGGCTTCTAACTGGAACGACATTCTTGTTGACCCCAGCATTCATGATCCTGAACCAAAGGTGTCATGCCAGAATTCAAAATCATCTTCACAATTGCCAGGGCAGCAGTCTCAAGGTCGCCAGCAACTTTCAGCTTCGTTGGGCGAAAAACATGCTAGTGCTCCACCCTCTTCCTCAGCAAATTCTGCTTCTGCCAAGCCACGAATGCGTTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAGCCAACTTGGTGGGAGTGAAAGAGCAACCCCTAAGGGTGTGCTGAAGCTTATGAAAGTTGAAGGCTTAACAATATATCATGTTAAAAGCCACTTGCAGAAATATAGGACAGCTAGATATAGACCGGATTCATCTGAAGGATCCTCTGAGAAAAAGTTAACTCCAGTGGAAGAGATGACATCTCTAGACTTGAAAACTGGTATTGAGCTCACTGAAGCTTTGAGACTCCAGATGGAGGTTCAGAAGCGCCTGCATGAACAACTAGAGATTCAAAGGAATTTGCAGTTGCGGATTGAAGAACAAGGAAGGTGCCTCCAAATGATGTTTGAGCAGCAATGCAAATCTGGTGTCGAAAAGTTTAAGGCAGCATCATCTGCCATTGATGATCCCTCTGGAGTGTCATCAGATGCTATTAAAGATTCTTCTGCCAAAACTGAAGTGGATGTCTCCCAAGCGGGCCATTGCCAATCAGGAACTGAGCAAGATAATAGCAATGCCATAGTTGAAGAATGCTTACTGAAAGATGATGACAAGCATAATGCTCCTGAAAGTCACAGTTCTGATAGTCCTAAGCAACATGCGAGTGAAGATGATGTTAATGCTCAACCATCAAAGCGT 1455 0.4419 MEARPAFSIERSSAKQLSSMGMSGALSSSLPVHPTPIEETYSKLPDSQQVFVEKEHSERPVAHSSHLNSSGAVGHMFSSSPGYSTDLHHSSLSPHGKHSRNSHFISQSSSNMASLPLTYSSSTGPLPSTTSTCYSKESNGSWALDSFPNILDFPVHTSIKDSQVEGSACNMMAPDEYGKRNDWQEWADQLINDDDALASNWNDILVDPSIHDPEPKVSCQNSKSSSQLPGQQSQGRQQLSASLGEKHASAPPSSSANSASAKPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGSSEKKLTPVEEMTSLDLKTGIELTEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRCLQMMFEQQCKSGVEKFKAASSAIDDPSGVSSDAIKDSSAKTEVDVSQAGHCQSGTEQDNSNAIVEECLLKDDDKHNAPESHSSDSPKQHASEDDVNAQPSKR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1062g00001 485 MobiDBLite consensus disorder prediction 206 264 - -
Pral1062g00001 485 MobiDBLite consensus disorder prediction 18 40 - -
Pral1062g00001 485 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 230 473 IPR044848 GO:0003700
Pral1062g00001 485 FunFam Myb family transcription factor 261 319 - -
Pral1062g00001 485 MobiDBLite consensus disorder prediction 215 262 - -
Pral1062g00001 485 MobiDBLite consensus disorder prediction 403 485 - -
Pral1062g00001 485 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Pral1062g00001 485 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
Pral1062g00001 485 Coils Coil 350 370 - -
Pral1062g00001 485 MobiDBLite consensus disorder prediction 407 445 - -
Pral1062g00001 485 MobiDBLite consensus disorder prediction 63 90 - -
Pral1062g00001 485 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Pral1062g00001 485 Gene3D - 261 320 - -
Pral1062g00001 485 MobiDBLite consensus disorder prediction 448 485 - -
Pral1062g00001 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Pral1062g00001 485 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Pral1062g00001 485 MobiDBLite consensus disorder prediction 53 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1062g00001 Pral-Chr1062 8 4707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1062g00001 1 435 G2-like Transcription Factor Family AT4G28610 46.637 1.35e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral1062g00001 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1062g00001 - - gmx:100810560 644.425